Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CtcfQ61164 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CtcfQ61164 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CtcfQ61164 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
CtcfQ61164 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CtcfQ61164 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CtcfQ61164 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CtcfQ61164 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC18.52■□□□□ 0.56
CtcfQ61164 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.52■□□□□ 0.56
CtcfQ61164 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CtcfQ61164 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC18.52■□□□□ 0.56
CtcfQ61164 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CtcfQ61164 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CtcfQ61164 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CtcfQ61164 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CtcfQ61164 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC18.52■□□□□ 0.56
CtcfQ61164 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
CtcfQ61164 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CtcfQ61164 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.55
CtcfQ61164 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
CtcfQ61164 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CtcfQ61164 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CtcfQ61164 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CtcfQ61164 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CtcfQ61164 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CtcfQ61164 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CtcfQ61164 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.51■□□□□ 0.55
CtcfQ61164 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC18.51■□□□□ 0.55
CtcfQ61164 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CtcfQ61164 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.51■□□□□ 0.55
CtcfQ61164 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CtcfQ61164 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CtcfQ61164 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
CtcfQ61164 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CtcfQ61164 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CtcfQ61164 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CtcfQ61164 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CtcfQ61164 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CtcfQ61164 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CtcfQ61164 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CtcfQ61164 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CtcfQ61164 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.5■□□□□ 0.55
CtcfQ61164 Gm44878-201ENSMUST00000205812 1295 ntBASIC18.5■□□□□ 0.55
CtcfQ61164 Gm4974-201ENSMUST00000209974 875 ntBASIC18.5■□□□□ 0.55
CtcfQ61164 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.5■□□□□ 0.55
CtcfQ61164 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.5■□□□□ 0.55
CtcfQ61164 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CtcfQ61164 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.5■□□□□ 0.55
CtcfQ61164 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CtcfQ61164 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CtcfQ61164 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.5■□□□□ 0.55
CtcfQ61164 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CtcfQ61164 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CtcfQ61164 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
CtcfQ61164 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.49■□□□□ 0.55
CtcfQ61164 Gm10698-201ENSMUST00000182663 604 ntBASIC18.49■□□□□ 0.55
CtcfQ61164 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.49■□□□□ 0.55
CtcfQ61164 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.49■□□□□ 0.55
CtcfQ61164 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CtcfQ61164 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.48■□□□□ 0.55
CtcfQ61164 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
CtcfQ61164 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
CtcfQ61164 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CtcfQ61164 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.48■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms