Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc88aQ5SNZ0 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Ccdc88aQ5SNZ0 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc88aQ5SNZ0 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Ccdc88aQ5SNZ0 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm7063-201ENSMUST00000186840 981 ntBASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Ighv6-1-201ENSMUST00000193612 343 ntBASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm18195-201ENSMUST00000207604 706 ntBASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc88aQ5SNZ0 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm12644-201ENSMUST00000119935 606 ntBASIC19.27■□□□□ 0.68
Ccdc88aQ5SNZ0 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ccdc88aQ5SNZ0 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ccdc88aQ5SNZ0 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ccdc88aQ5SNZ0 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ccdc88aQ5SNZ0 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ccdc88aQ5SNZ0 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm12895-201ENSMUST00000122214 226 ntBASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm9449-201ENSMUST00000207265 1011 ntBASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm7935-201ENSMUST00000100555 1278 ntBASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc88aQ5SNZ0 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc88aQ5SNZ0 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm27702-201ENSMUST00000184512 56 ntBASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC19.24■□□□□ 0.67
Ccdc88aQ5SNZ0 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm11841-201ENSMUST00000117060 1963 ntBASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm10052-201ENSMUST00000168019 960 ntBASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms