Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp28Q5I043 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp28Q5I043 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Usp28Q5I043 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp28Q5I043 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp28Q5I043 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC19.1■□□□□ 0.65
Usp28Q5I043 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
Usp28Q5I043 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Usp28Q5I043 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Usp28Q5I043 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC19.1■□□□□ 0.65
Usp28Q5I043 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC19.1■□□□□ 0.65
Usp28Q5I043 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.1■□□□□ 0.65
Usp28Q5I043 Gm7791-201ENSMUST00000219066 539 ntBASIC19.1■□□□□ 0.65
Usp28Q5I043 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
Usp28Q5I043 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp28Q5I043 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp28Q5I043 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Usp28Q5I043 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Usp28Q5I043 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp28Q5I043 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp28Q5I043 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp28Q5I043 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Usp28Q5I043 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC19.09■□□□□ 0.65
Usp28Q5I043 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.09■□□□□ 0.65
Usp28Q5I043 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Usp28Q5I043 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Usp28Q5I043 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp28Q5I043 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC19.09■□□□□ 0.65
Usp28Q5I043 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp28Q5I043 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Usp28Q5I043 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp28Q5I043 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Usp28Q5I043 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC19.08■□□□□ 0.65
Usp28Q5I043 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp28Q5I043 Gm13168-201ENSMUST00000121771 632 ntBASIC19.08■□□□□ 0.64
Usp28Q5I043 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp28Q5I043 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
Usp28Q5I043 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp28Q5I043 Gm20760-201ENSMUST00000179197 648 ntBASIC19.08■□□□□ 0.64
Usp28Q5I043 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp28Q5I043 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp28Q5I043 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Usp28Q5I043 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC19.08■□□□□ 0.64
Usp28Q5I043 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp28Q5I043 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp28Q5I043 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp28Q5I043 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp28Q5I043 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp28Q5I043 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Usp28Q5I043 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp28Q5I043 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Usp28Q5I043 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp28Q5I043 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp28Q5I043 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp28Q5I043 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp28Q5I043 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC19.07■□□□□ 0.64
Usp28Q5I043 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Usp28Q5I043 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Usp28Q5I043 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Usp28Q5I043 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp28Q5I043 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp28Q5I043 Gm9954-202ENSMUST00000198686 4725 ntBASIC19.07■□□□□ 0.64
Usp28Q5I043 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC19.07■□□□□ 0.64
Usp28Q5I043 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp28Q5I043 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Usp28Q5I043 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Usp28Q5I043 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC19.06■□□□□ 0.64
Usp28Q5I043 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
Usp28Q5I043 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Usp28Q5I043 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp28Q5I043 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms