Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3bQ3ULL6 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3bQ3ULL6 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3bQ3ULL6 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Gm7213-201ENSMUST00000215977 950 ntBASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3bQ3ULL6 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.96■□□□□ 0.47
Upf3bQ3ULL6 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Upf3bQ3ULL6 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Upf3bQ3ULL6 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3bQ3ULL6 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3bQ3ULL6 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms