Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Gm6728-201ENSMUST00000178117 1065 ntBASIC19.77■□□□□ 0.76
Limch1Q3UH68 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC19.77■□□□□ 0.76
Limch1Q3UH68 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC19.77■□□□□ 0.76
Limch1Q3UH68 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Limch1Q3UH68 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Limch1Q3UH68 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Limch1Q3UH68 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Limch1Q3UH68 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC19.76■□□□□ 0.75
Limch1Q3UH68 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Limch1Q3UH68 AA414768-201ENSMUST00000121924 1257 ntBASIC19.76■□□□□ 0.75
Limch1Q3UH68 Mir5130-201ENSMUST00000175160 84 ntBASIC19.76■□□□□ 0.75
Limch1Q3UH68 Gm2274-201ENSMUST00000184539 609 ntBASIC19.76■□□□□ 0.75
Limch1Q3UH68 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Limch1Q3UH68 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Gm7638-201ENSMUST00000121348 967 ntBASIC19.75■□□□□ 0.75
Limch1Q3UH68 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Gm9731-201ENSMUST00000209480 747 ntBASIC19.75■□□□□ 0.75
Limch1Q3UH68 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Limch1Q3UH68 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Gm13216-201ENSMUST00000117145 591 ntBASIC19.74■□□□□ 0.75
Limch1Q3UH68 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Gm6345-202ENSMUST00000180900 204 ntBASIC19.74■□□□□ 0.75
Limch1Q3UH68 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Gm43548-201ENSMUST00000197139 2353 ntBASIC19.74■□□□□ 0.75
Limch1Q3UH68 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Limch1Q3UH68 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Limch1Q3UH68 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC19.73■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms