Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Rnf40Q3U319 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Rnf40Q3U319 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Gm8493-201ENSMUST00000196881 489 ntBASIC17.48■□□□□ 0.39
Rnf40Q3U319 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Gm43072-201ENSMUST00000200283 1671 ntBASIC17.48■□□□□ 0.39
Rnf40Q3U319 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC17.48■□□□□ 0.39
Rnf40Q3U319 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
Rnf40Q3U319 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Rnf40Q3U319 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.46■□□□□ 0.39
Rnf40Q3U319 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Gm19721-201ENSMUST00000195284 1764 ntBASIC17.46■□□□□ 0.39
Rnf40Q3U319 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf40Q3U319 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Rnf40Q3U319 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Rnf40Q3U319 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Zkscan3-208ENSMUST00000224820 5398 ntBASIC17.45■□□□□ 0.38
Rnf40Q3U319 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms