Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC21.3■■□□□ 1
Msh6P54276 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC21.3■■□□□ 1
Msh6P54276 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Msh6P54276 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Msh6P54276 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Msh6P54276 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Msh6P54276 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Msh6P54276 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC21.29■■□□□ 1
Msh6P54276 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC21.29■■□□□ 1
Msh6P54276 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC21.29■■□□□ 1
Msh6P54276 AC161829.1-201ENSMUST00000220298 281 ntBASIC21.29■■□□□ 1
Msh6P54276 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC21.29■■□□□ 1
Msh6P54276 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Msh6P54276 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC21.29■■□□□ 1
Msh6P54276 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Msh6P54276 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Msh6P54276 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Msh6P54276 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Msh6P54276 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Msh6P54276 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Msh6P54276 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Msh6P54276 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC21.28■■□□□ 1
Msh6P54276 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC21.28■■□□□ 1
Msh6P54276 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC21.28■■□□□ 1
Msh6P54276 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC21.28■■□□□ 1
Msh6P54276 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC21.28■■□□□ 1
Msh6P54276 Gm18421-201ENSMUST00000204122 625 ntBASIC21.28■■□□□ 1
Msh6P54276 Gm18206-201ENSMUST00000207027 926 ntBASIC21.28■■□□□ 1
Msh6P54276 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Msh6P54276 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC21.28■■□□□ 1
Msh6P54276 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Msh6P54276 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC21.27■■□□□ 1
Msh6P54276 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Msh6P54276 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Msh6P54276 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC21.27■■□□□ 1
Msh6P54276 Gm7935-201ENSMUST00000100555 1278 ntBASIC21.27■■□□□ 1
Msh6P54276 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Msh6P54276 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC21.27■■□□□ 1
Msh6P54276 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC21.27■■□□□ 1
Msh6P54276 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC21.27■■□□□ 1
Msh6P54276 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC21.27■■□□□ 1
Msh6P54276 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC21.27■■□□□ 1
Msh6P54276 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Msh6P54276 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Msh6P54276 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Msh6P54276 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC21.27■■□□□ 1
Msh6P54276 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Msh6P54276 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Msh6P54276 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Msh6P54276 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Msh6P54276 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Msh6P54276 Gfra2-202ENSMUST00000227633 1480 ntBASIC21.26■□□□□ 0.99
Msh6P54276 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Msh6P54276 Gm12644-201ENSMUST00000119935 606 ntBASIC21.26■□□□□ 0.99
Msh6P54276 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Msh6P54276 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC21.26■□□□□ 0.99
Msh6P54276 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC21.26■□□□□ 0.99
Msh6P54276 Gm37935-201ENSMUST00000192012 982 ntBASIC21.26■□□□□ 0.99
Msh6P54276 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC21.26■□□□□ 0.99
Msh6P54276 Gm2651-201ENSMUST00000203560 838 ntBASIC21.26■□□□□ 0.99
Msh6P54276 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Msh6P54276 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC21.26■□□□□ 0.99
Msh6P54276 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Msh6P54276 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Msh6P54276 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Msh6P54276 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Msh6P54276 Gm6598-201ENSMUST00000202719 2615 ntBASIC21.25■□□□□ 0.99
Msh6P54276 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh6P54276 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh6P54276 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC21.25■□□□□ 0.99
Msh6P54276 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh6P54276 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Msh6P54276 AC153794.1-201ENSMUST00000169148 126 ntBASIC21.25■□□□□ 0.99
Msh6P54276 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh6P54276 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh6P54276 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC21.25■□□□□ 0.99
Msh6P54276 AC108846.1-201ENSMUST00000214531 513 ntBASIC21.25■□□□□ 0.99
Msh6P54276 AC132104.2-201ENSMUST00000215011 266 ntBASIC21.25■□□□□ 0.99
Msh6P54276 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC21.25■□□□□ 0.99
Msh6P54276 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh6P54276 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh6P54276 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh6P54276 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh6P54276 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh6P54276 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC21.24■□□□□ 0.99
Msh6P54276 Gm13312-201ENSMUST00000119631 718 ntBASIC21.24■□□□□ 0.99
Msh6P54276 Gm43073-201ENSMUST00000198200 1189 ntBASIC21.24■□□□□ 0.99
Msh6P54276 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh6P54276 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh6P54276 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Msh6P54276 Zfp264-201ENSMUST00000208656 1563 ntBASIC21.24■□□□□ 0.99
Msh6P54276 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh6P54276 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh6P54276 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh6P54276 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh6P54276 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh6P54276 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh6P54276 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC21.24■□□□□ 0.99
Msh6P54276 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC21.23■□□□□ 0.99
Msh6P54276 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms