Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 AC164629.2-201ENSMUST00000217916 270 ntBASIC16.08■□□□□ 0.16
Sox3P53784 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox3P53784 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox3P53784 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox3P53784 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox3P53784 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox3P53784 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox3P53784 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC16.08■□□□□ 0.16
Sox3P53784 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox3P53784 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Sox3P53784 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC16.07■□□□□ 0.16
Sox3P53784 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC16.07■□□□□ 0.16
Sox3P53784 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC16.07■□□□□ 0.16
Sox3P53784 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Sox3P53784 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Sox3P53784 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox3P53784 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Sox3P53784 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Sox3P53784 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Sox3P53784 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC16.06■□□□□ 0.16
Sox3P53784 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Sox3P53784 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox3P53784 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Sox3P53784 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Mir1668-201ENSMUST00000184114 107 ntBASIC16.05■□□□□ 0.16
Sox3P53784 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Sox3P53784 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC16.05■□□□□ 0.16
Sox3P53784 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Sox3P53784 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Sox3P53784 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Sox3P53784 Gm45774-201ENSMUST00000211992 2665 ntBASIC16.04■□□□□ 0.16
Sox3P53784 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Sox3P53784 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Sox3P53784 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
Sox3P53784 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Sox3P53784 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Sox3P53784 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Sox3P53784 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC16.04■□□□□ 0.16
Sox3P53784 Mir2861-201ENSMUST00000175539 82 ntBASIC16.04■□□□□ 0.16
Sox3P53784 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC16.04■□□□□ 0.16
Sox3P53784 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC16.04■□□□□ 0.16
Sox3P53784 Otx2os1-206ENSMUST00000228153 787 ntBASIC16.04■□□□□ 0.16
Sox3P53784 Spr-ps1-201ENSMUST00000089584 605 ntBASIC16.04■□□□□ 0.16
Sox3P53784 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Sox3P53784 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Sox3P53784 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Sox3P53784 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Sox3P53784 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Sox3P53784 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Sox3P53784 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC16.03■□□□□ 0.16
Sox3P53784 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.03■□□□□ 0.16
Sox3P53784 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms