Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lmx1bO88609 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lmx1bO88609 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lmx1bO88609 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lmx1bO88609 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Lmx1bO88609 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC15.24■□□□□ 0.03
Lmx1bO88609 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lmx1bO88609 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lmx1bO88609 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lmx1bO88609 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lmx1bO88609 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lmx1bO88609 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Lmx1bO88609 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lmx1bO88609 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lmx1bO88609 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Lmx1bO88609 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC15.23■□□□□ 0.03
Lmx1bO88609 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC15.23■□□□□ 0.03
Lmx1bO88609 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Gm14859-201ENSMUST00000117752 357 ntBASIC15.23■□□□□ 0.03
Lmx1bO88609 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC15.23■□□□□ 0.03
Lmx1bO88609 Gm7284-201ENSMUST00000131667 944 ntBASIC15.23■□□□□ 0.03
Lmx1bO88609 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Gm26039-201ENSMUST00000158152 144 ntBASIC15.23■□□□□ 0.03
Lmx1bO88609 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 AC154471.1-201ENSMUST00000224418 436 ntBASIC15.23■□□□□ 0.03
Lmx1bO88609 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Lmx1bO88609 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC15.23■□□□□ 0.03
Lmx1bO88609 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC15.23■□□□□ 0.03
Lmx1bO88609 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lmx1bO88609 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Lmx1bO88609 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Lmx1bO88609 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC15.22■□□□□ 0.03
Lmx1bO88609 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC15.22■□□□□ 0.03
Lmx1bO88609 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 Gm5587-201ENSMUST00000206270 674 ntBASIC15.22■□□□□ 0.03
Lmx1bO88609 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC15.22■□□□□ 0.03
Lmx1bO88609 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC15.22■□□□□ 0.03
Lmx1bO88609 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Lmx1bO88609 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Lmx1bO88609 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Lmx1bO88609 Shroom3-211ENSMUST00000225438 5742 ntBASIC15.22■□□□□ 0.03
Lmx1bO88609 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC15.21■□□□□ 0.03
Lmx1bO88609 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Lmx1bO88609 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lmx1bO88609 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Lmx1bO88609 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lmx1bO88609 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lmx1bO88609 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Lmx1bO88609 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lmx1bO88609 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Lmx1bO88609 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Lmx1bO88609 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Lmx1bO88609 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC15.21■□□□□ 0.03
Lmx1bO88609 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC15.21■□□□□ 0.03
Lmx1bO88609 Gm43548-201ENSMUST00000197139 2353 ntBASIC15.21■□□□□ 0.03
Lmx1bO88609 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lmx1bO88609 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lmx1bO88609 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lmx1bO88609 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Lmx1bO88609 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Lmx1bO88609 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Lmx1bO88609 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Lmx1bO88609 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC15.2■□□□□ 0.02
Lmx1bO88609 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lmx1bO88609 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC15.2■□□□□ 0.02
Lmx1bO88609 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lmx1bO88609 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lmx1bO88609 Gm11355-201ENSMUST00000121120 306 ntBASIC15.2■□□□□ 0.02
Lmx1bO88609 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Lmx1bO88609 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC15.2■□□□□ 0.02
Lmx1bO88609 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC15.2■□□□□ 0.02
Lmx1bO88609 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC15.2■□□□□ 0.02
Lmx1bO88609 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
Lmx1bO88609 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms