Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Hmgb3O54879 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC14.01□□□□□ -0.17
Hmgb3O54879 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Appbp2os-202ENSMUST00000206972 447 ntBASIC14.01□□□□□ -0.17
Hmgb3O54879 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC14.01□□□□□ -0.17
Hmgb3O54879 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Hmgb3O54879 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Hmgb3O54879 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Hmgb3O54879 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC14.01□□□□□ -0.17
Hmgb3O54879 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Hmgb3O54879 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC14□□□□□ -0.17
Hmgb3O54879 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC14□□□□□ -0.17
Hmgb3O54879 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
Hmgb3O54879 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC14□□□□□ -0.17
Hmgb3O54879 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Gm11841-201ENSMUST00000117060 1963 ntBASIC14□□□□□ -0.17
Hmgb3O54879 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC14□□□□□ -0.17
Hmgb3O54879 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hmgb3O54879 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Hmgb3O54879 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Hmgb3O54879 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Nespas-201ENSMUST00000143738 1083 ntBASIC13.99□□□□□ -0.17
Hmgb3O54879 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Hmgb3O54879 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC13.99□□□□□ -0.17
Hmgb3O54879 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC13.99□□□□□ -0.17
Hmgb3O54879 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hmgb3O54879 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Hmgb3O54879 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC13.98□□□□□ -0.17
Hmgb3O54879 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
Hmgb3O54879 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC13.98□□□□□ -0.17
Hmgb3O54879 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC13.98□□□□□ -0.17
Hmgb3O54879 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC13.98□□□□□ -0.17
Hmgb3O54879 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC13.98□□□□□ -0.17
Hmgb3O54879 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Hmgb3O54879 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
Hmgb3O54879 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Hmgb3O54879 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms