Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC17.32■□□□□ 0.36
Sdc4O35988 Gm45328-201ENSMUST00000210942 917 ntBASIC17.32■□□□□ 0.36
Sdc4O35988 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Sdc4O35988 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Sdc4O35988 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Sdc4O35988 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Gm9103-201ENSMUST00000119371 405 ntBASIC17.31■□□□□ 0.36
Sdc4O35988 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC17.31■□□□□ 0.36
Sdc4O35988 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Gm18115-201ENSMUST00000221209 621 ntBASIC17.31■□□□□ 0.36
Sdc4O35988 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Sdc4O35988 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
Sdc4O35988 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sdc4O35988 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.3■□□□□ 0.36
Sdc4O35988 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sdc4O35988 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.29■□□□□ 0.36
Sdc4O35988 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Sdc4O35988 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Sdc4O35988 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC17.29■□□□□ 0.36
Sdc4O35988 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Sdc4O35988 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sdc4O35988 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Sdc4O35988 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Sdc4O35988 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Sdc4O35988 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Sdc4O35988 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Phf7-203ENSMUST00000226565 1971 ntBASIC17.28■□□□□ 0.36
Sdc4O35988 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Sdc4O35988 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sdc4O35988 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Sdc4O35988 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms