Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Nr1i3O35627 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1i3O35627 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1i3O35627 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Nr1i3O35627 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Nr1i3O35627 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Nr1i3O35627 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1i3O35627 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1i3O35627 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC18.07■□□□□ 0.48
Nr1i3O35627 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.07■□□□□ 0.48
Nr1i3O35627 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Nr1i3O35627 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC18.07■□□□□ 0.48
Nr1i3O35627 Gm7791-201ENSMUST00000219066 539 ntBASIC18.07■□□□□ 0.48
Nr1i3O35627 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1i3O35627 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1i3O35627 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1i3O35627 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1i3O35627 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1i3O35627 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC18.07■□□□□ 0.48
Nr1i3O35627 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1i3O35627 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nr1i3O35627 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Nr1i3O35627 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Nr1i3O35627 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Nr1i3O35627 Gm13168-201ENSMUST00000121771 632 ntBASIC18.06■□□□□ 0.48
Nr1i3O35627 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Nr1i3O35627 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Nr1i3O35627 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nr1i3O35627 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nr1i3O35627 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Nr1i3O35627 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nr1i3O35627 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nr1i3O35627 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nr1i3O35627 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nr1i3O35627 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nr1i3O35627 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nr1i3O35627 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nr1i3O35627 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nr1i3O35627 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Nr1i3O35627 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nr1i3O35627 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Nr1i3O35627 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC18.05■□□□□ 0.48
Nr1i3O35627 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nr1i3O35627 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.05■□□□□ 0.48
Nr1i3O35627 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Nr1i3O35627 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC18.05■□□□□ 0.48
Nr1i3O35627 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.05■□□□□ 0.48
Nr1i3O35627 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nr1i3O35627 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Nr1i3O35627 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Nr1i3O35627 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nr1i3O35627 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nr1i3O35627 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Nr1i3O35627 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Nr1i3O35627 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Nr1i3O35627 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Nr1i3O35627 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Nr1i3O35627 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Nr1i3O35627 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
Nr1i3O35627 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.03■□□□□ 0.48
Nr1i3O35627 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.03■□□□□ 0.48
Nr1i3O35627 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Nr1i3O35627 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
Nr1i3O35627 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Nr1i3O35627 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nr1i3O35627 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Nr1i3O35627 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Nr1i3O35627 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Nr1i3O35627 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Nr1i3O35627 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Nr1i3O35627 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Nr1i3O35627 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Nr1i3O35627 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms