Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ube4aE9Q735 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ube4aE9Q735 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ube4aE9Q735 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube4aE9Q735 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.18■□□□□ 0.82
Ube4aE9Q735 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ube4aE9Q735 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Ube4aE9Q735 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube4aE9Q735 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Ube4aE9Q735 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
Ube4aE9Q735 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube4aE9Q735 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube4aE9Q735 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Ube4aE9Q735 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC20.18■□□□□ 0.82
Ube4aE9Q735 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube4aE9Q735 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ube4aE9Q735 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Gm7935-201ENSMUST00000100555 1278 ntBASIC20.17■□□□□ 0.82
Ube4aE9Q735 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Gm13884-201ENSMUST00000118103 829 ntBASIC20.17■□□□□ 0.82
Ube4aE9Q735 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ube4aE9Q735 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ube4aE9Q735 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ube4aE9Q735 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ube4aE9Q735 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Ube4aE9Q735 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ube4aE9Q735 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ube4aE9Q735 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ube4aE9Q735 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
Ube4aE9Q735 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ube4aE9Q735 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC20.16■□□□□ 0.82
Ube4aE9Q735 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ube4aE9Q735 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC20.16■□□□□ 0.82
Ube4aE9Q735 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ube4aE9Q735 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Ube4aE9Q735 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 AC159301.1-201ENSMUST00000225130 1182 ntBASIC20.15■□□□□ 0.82
Ube4aE9Q735 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ube4aE9Q735 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Ube4aE9Q735 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Ube4aE9Q735 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Ube4aE9Q735 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
Ube4aE9Q735 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ube4aE9Q735 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ube4aE9Q735 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ube4aE9Q735 Gm15442-201ENSMUST00000117905 1527 ntBASIC20.14■□□□□ 0.81
Ube4aE9Q735 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ube4aE9Q735 Gm12644-201ENSMUST00000119935 606 ntBASIC20.14■□□□□ 0.81
Ube4aE9Q735 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ube4aE9Q735 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ube4aE9Q735 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ube4aE9Q735 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ube4aE9Q735 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Ube4aE9Q735 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ube4aE9Q735 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ube4aE9Q735 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ube4aE9Q735 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC20.13■□□□□ 0.81
Ube4aE9Q735 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Gm44454-201ENSMUST00000198541 138 ntBASIC20.13■□□□□ 0.81
Ube4aE9Q735 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ube4aE9Q735 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ube4aE9Q735 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms