Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC023490.2-201ENST00000359859 470 ntBASIC5.63□□□□□ -1.51
CCDC42Q96M95 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CCDC42Q96M95 RNA5SP122-201ENST00000384457 108 ntBASIC5.63□□□□□ -1.51
CCDC42Q96M95 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CCDC42Q96M95 RN7SKP16-201ENST00000410180 299 ntBASIC5.63□□□□□ -1.51
CCDC42Q96M95 RNA5SP487-201ENST00000410186 122 ntBASIC5.63□□□□□ -1.51
CCDC42Q96M95 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC42Q96M95 TNPO1P1-201ENST00000423641 1138 ntBASIC5.63□□□□□ -1.51
CCDC42Q96M95 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.63□□□□□ -1.51
CCDC42Q96M95 NAP1L4P2-201ENST00000425958 899 ntBASIC5.63□□□□□ -1.51
CCDC42Q96M95 AC115283.1-201ENST00000427353 400 ntBASIC5.63□□□□□ -1.51
CCDC42Q96M95 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC42Q96M95 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC42Q96M95 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC42Q96M95 AP006245.2-201ENST00000522004 300 ntBASIC5.63□□□□□ -1.51
CCDC42Q96M95 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC42Q96M95 AC093591.2-201ENST00000565254 3843 ntBASIC5.63□□□□□ -1.51
CCDC42Q96M95 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC42Q96M95 AC018695.5-201ENST00000605872 315 ntBASIC5.63□□□□□ -1.51
CCDC42Q96M95 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC42Q96M95 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC42Q96M95 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CCDC42Q96M95 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC42Q96M95 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC42Q96M95 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
CCDC42Q96M95 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CCDC42Q96M95 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
CCDC42Q96M95 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC42Q96M95 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
CCDC42Q96M95 RNU1-74P-201ENST00000384108 171 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 OR4K12P-201ENST00000406538 961 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 AC009238.2-201ENST00000431026 355 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 DNAJA1P5-201ENST00000440278 943 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC42Q96M95 GTF3AP5-201ENST00000442645 697 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 AC104634.1-201ENST00000452720 462 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 RN7SL51P-201ENST00000468230 285 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 AC069304.1-201ENST00000491593 704 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 AC023424.1-201ENST00000496058 459 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC42Q96M95 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC42Q96M95 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC42Q96M95 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC42Q96M95 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC42Q96M95 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC42Q96M95 AC008814.1-201ENST00000603797 406 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 AC009779.8-202ENST00000607990 932 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 AL096712.1-201ENST00000614561 159 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC42Q96M95 AC103703.1-201ENST00000634783 663 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 AC073869.10-201ENST00000642016 354 ntBASIC5.62□□□□□ -1.51
CCDC42Q96M95 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC42Q96M95 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC42Q96M95 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC42Q96M95 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC42Q96M95 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 MIR105-1-201ENST00000385222 81 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 OR8V1P-201ENST00000395193 873 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 LYPLA1P3-201ENST00000402650 695 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 AL390316.1-201ENST00000406279 553 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 SLC20A1P1-201ENST00000413906 956 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 HSPE1P16-201ENST00000426640 348 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 MTND6P12-201ENST00000428247 522 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 AC002504.1-201ENST00000438281 691 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 SUMO2P3-201ENST00000438311 288 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 AL157385.1-201ENST00000446973 268 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 RPS4XP12-201ENST00000461747 709 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 RNA5SP473-201ENST00000516402 125 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 IGKV2-4-201ENST00000523070 340 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 BLZF2P-201ENST00000553776 1130 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 AC015720.2-201ENST00000567709 334 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 AC011840.5-201ENST00000582125 771 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms