Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
COL4A4P53420 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC5.7□□□□□ -1.5
COL4A4P53420 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
COL4A4P53420 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
COL4A4P53420 PCAT14-202ENST00000627127 3935 ntBASIC5.7□□□□□ -1.5
COL4A4P53420 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
COL4A4P53420 AC079097.1-201ENST00000512187 1399 ntBASIC5.7□□□□□ -1.5
COL4A4P53420 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
COL4A4P53420 AL449283.1-201ENST00000602631 3403 ntBASIC5.7□□□□□ -1.5
COL4A4P53420 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC5.69□□□□□ -1.5
COL4A4P53420 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
COL4A4P53420 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.69□□□□□ -1.5
COL4A4P53420 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.69□□□□□ -1.5
COL4A4P53420 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.69□□□□□ -1.5
COL4A4P53420 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.69□□□□□ -1.5
COL4A4P53420 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL4A4P53420 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.69□□□□□ -1.5
COL4A4P53420 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL4A4P53420 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.69□□□□□ -1.5
COL4A4P53420 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.69□□□□□ -1.5
COL4A4P53420 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.69□□□□□ -1.5
COL4A4P53420 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.69□□□□□ -1.5
COL4A4P53420 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.69□□□□□ -1.5
COL4A4P53420 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.69□□□□□ -1.5
COL4A4P53420 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL4A4P53420 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.69□□□□□ -1.5
COL4A4P53420 AC233699.1-201ENST00000569955 1168 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.69□□□□□ -1.5
COL4A4P53420 AL078621.3-201ENST00000623707 2042 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.69□□□□□ -1.5
COL4A4P53420 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.69□□□□□ -1.5
COL4A4P53420 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL4A4P53420 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL4A4P53420 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL4A4P53420 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
COL4A4P53420 UG0898H09-202ENST00000623646 7040 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL4A4P53420 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL4A4P53420 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
COL4A4P53420 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL4A4P53420 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL4A4P53420 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.69□□□□□ -1.5
COL4A4P53420 AC133552.1-201ENST00000569988 4007 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL4A4P53420 AC132825.1-201ENST00000463573 2247 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL4A4P53420 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
COL4A4P53420 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL4A4P53420 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL4A4P53420 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL4A4P53420 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL4A4P53420 RN7SKP17-201ENST00000411242 351 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.69□□□□□ -1.5
COL4A4P53420 AC093414.1-201ENST00000434712 514 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 AL161722.1-201ENST00000446972 1032 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 AC009127.1-201ENST00000467090 155 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 RN7SL354P-201ENST00000469282 294 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.69□□□□□ -1.5
COL4A4P53420 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.69□□□□□ -1.5
COL4A4P53420 BTF3P13-201ENST00000513224 490 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC5.69□□□□□ -1.5
COL4A4P53420 SCARNA20.4-201ENST00000516969 131 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 AC134698.5-201ENST00000519444 336 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.69□□□□□ -1.5
COL4A4P53420 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.69□□□□□ -1.5
COL4A4P53420 EDDM3DP-201ENST00000554692 434 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 UBE2FP2-201ENST00000566646 462 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 MIR4420-201ENST00000583944 77 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.69□□□□□ -1.5
COL4A4P53420 AC108738.1-201ENST00000603703 237 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL4A4P53420 AC010632.3-201ENST00000611377 369 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 AC073575.2-201ENST00000614212 627 ntBASIC5.69□□□□□ -1.5
COL4A4P53420 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.69□□□□□ -1.5
COL4A4P53420 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC5.69□□□□□ -1.5
COL4A4P53420 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.69□□□□□ -1.5
COL4A4P53420 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL4A4P53420 AC007114.2-201ENST00000576014 4281 ntBASIC5.68□□□□□ -1.5
COL4A4P53420 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.68□□□□□ -1.5
COL4A4P53420 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.68□□□□□ -1.5
COL4A4P53420 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.68□□□□□ -1.5
COL4A4P53420 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC5.68□□□□□ -1.5
COL4A4P53420 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC5.68□□□□□ -1.5
COL4A4P53420 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.68□□□□□ -1.5
COL4A4P53420 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC5.68□□□□□ -1.5
COL4A4P53420 AC007996.1-201ENST00000620414 2821 ntBASIC5.68□□□□□ -1.5
COL4A4P53420 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms