Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL118508.4-201ENST00000624142 1176 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AL691477.1-201ENST00000624398 162 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AL049767.1-202ENST00000637826 242 ntBASIC5.24□□□□□ -1.57
SOX3P41225 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.24□□□□□ -1.57
SOX3P41225 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.24□□□□□ -1.57
SOX3P41225 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SOX3P41225 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SOX3P41225 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.24□□□□□ -1.57
SOX3P41225 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SOX3P41225 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SOX3P41225 LINC02019-201ENST00000608605 2060 ntBASIC5.24□□□□□ -1.57
SOX3P41225 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
SOX3P41225 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
SOX3P41225 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.23□□□□□ -1.57
SOX3P41225 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 RN7SKP186-201ENST00000365371 303 ntBASIC5.23□□□□□ -1.57
SOX3P41225 RNA5SP131-201ENST00000365452 119 ntBASIC5.23□□□□□ -1.57
SOX3P41225 RNU6-891P-201ENST00000384280 111 ntBASIC5.23□□□□□ -1.57
SOX3P41225 RNA5SP187-201ENST00000384400 119 ntBASIC5.23□□□□□ -1.57
SOX3P41225 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.23□□□□□ -1.57
SOX3P41225 DHFRP5-201ENST00000406944 564 ntBASIC5.23□□□□□ -1.57
SOX3P41225 NENFP1-201ENST00000419476 466 ntBASIC5.23□□□□□ -1.57
SOX3P41225 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.23□□□□□ -1.57
SOX3P41225 AC079355.1-201ENST00000421770 223 ntBASIC5.23□□□□□ -1.57
SOX3P41225 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.23□□□□□ -1.57
SOX3P41225 TNPO1P1-201ENST00000423641 1138 ntBASIC5.23□□□□□ -1.57
SOX3P41225 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.23□□□□□ -1.57
SOX3P41225 VN1R21P-201ENST00000426703 765 ntBASIC5.23□□□□□ -1.57
SOX3P41225 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.23□□□□□ -1.57
SOX3P41225 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.23□□□□□ -1.57
SOX3P41225 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 TRBV8-1-201ENST00000481590 279 ntBASIC5.23□□□□□ -1.57
SOX3P41225 AL136038.1-201ENST00000497246 351 ntBASIC5.23□□□□□ -1.57
SOX3P41225 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
SOX3P41225 AC011411.1-201ENST00000509592 876 ntBASIC5.23□□□□□ -1.57
SOX3P41225 GAPDHP62-201ENST00000515313 990 ntBASIC5.23□□□□□ -1.57
SOX3P41225 AC021146.10-201ENST00000515628 706 ntBASIC5.23□□□□□ -1.57
SOX3P41225 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.23□□□□□ -1.57
SOX3P41225 OR4A43P-201ENST00000532938 908 ntBASIC5.23□□□□□ -1.57
SOX3P41225 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.23□□□□□ -1.57
SOX3P41225 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.23□□□□□ -1.57
SOX3P41225 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.23□□□□□ -1.57
SOX3P41225 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC5.23□□□□□ -1.57
SOX3P41225 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.23□□□□□ -1.57
SOX3P41225 MIR6768-201ENST00000610734 72 ntBASIC5.23□□□□□ -1.57
SOX3P41225 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 AC104820.1-201ENST00000624183 307 ntBASIC5.23□□□□□ -1.57
SOX3P41225 AL022311.1-201ENST00000623726 19416 ntBASIC5.23□□□□□ -1.57
SOX3P41225 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.23□□□□□ -1.57
SOX3P41225 MAPK10-338ENST00000641647 3362 ntBASIC5.23□□□□□ -1.57
SOX3P41225 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.23□□□□□ -1.57
SOX3P41225 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
SOX3P41225 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.23□□□□□ -1.57
SOX3P41225 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.23□□□□□ -1.57
SOX3P41225 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
SOX3P41225 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX3P41225 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
SOX3P41225 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
SOX3P41225 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SOX3P41225 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX3P41225 AC007938.2-201ENST00000604666 2634 ntBASIC5.22□□□□□ -1.57
SOX3P41225 AL034546.1-201ENST00000623740 3693 ntBASIC5.22□□□□□ -1.57
SOX3P41225 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX3P41225 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX3P41225 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX3P41225 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SOX3P41225 SNORA51.1-201ENST00000363243 140 ntBASIC5.22□□□□□ -1.57
SOX3P41225 U3.25-201ENST00000391209 220 ntBASIC5.22□□□□□ -1.57
SOX3P41225 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.22□□□□□ -1.57
SOX3P41225 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.22□□□□□ -1.57
SOX3P41225 AL450996.1-201ENST00000445574 1202 ntBASIC5.22□□□□□ -1.57
SOX3P41225 OR6C72P-201ENST00000451403 892 ntBASIC5.22□□□□□ -1.57
SOX3P41225 OR52A4P-202ENST00000481634 799 ntBASIC5.22□□□□□ -1.57
SOX3P41225 RN7SL466P-201ENST00000497546 295 ntBASIC5.22□□□□□ -1.57
SOX3P41225 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.22□□□□□ -1.57
SOX3P41225 RNU6-943P-201ENST00000516960 98 ntBASIC5.22□□□□□ -1.57
SOX3P41225 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC5.22□□□□□ -1.57
SOX3P41225 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.22□□□□□ -1.57
SOX3P41225 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.22□□□□□ -1.57
SOX3P41225 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.22□□□□□ -1.57
SOX3P41225 RBM22P12-201ENST00000567098 1255 ntBASIC5.22□□□□□ -1.57
SOX3P41225 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.22□□□□□ -1.57
SOX3P41225 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.22□□□□□ -1.57
SOX3P41225 AL589674.2-201ENST00000604304 337 ntBASIC5.22□□□□□ -1.57
SOX3P41225 HIRAP1-201ENST00000605318 787 ntBASIC5.22□□□□□ -1.57
SOX3P41225 BX322635.1-201ENST00000605804 496 ntBASIC5.22□□□□□ -1.57
SOX3P41225 AL022394.1-201ENST00000606979 292 ntBASIC5.22□□□□□ -1.57
SOX3P41225 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC5.22□□□□□ -1.57
SOX3P41225 AC007683.2-201ENST00000624681 714 ntBASIC5.22□□□□□ -1.57
SOX3P41225 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.22□□□□□ -1.57
SOX3P41225 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms