Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 CCNHP1-201ENST00000513311 678 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 RNA5SP362-201ENST00000516048 118 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 SNORD116-30-201ENST00000516468 85 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 NRBF2P4-201ENST00000520874 850 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 RN7SL753P-201ENST00000581238 290 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 AP000919.1-201ENST00000582850 985 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 AC060780.2-201ENST00000589047 198 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 PPATP2-201ENST00000605635 508 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 AC005014.3-201ENST00000605985 190 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 RNA5SP439-201ENST00000617595 124 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 AC106730.3-201ENST00000624568 641 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 AC016745.2-201ENST00000608834 3443 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 SAMM50P1-201ENST00000455403 1399 ntBASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 CD86-204ENST00000469710 1604 ntTSL 2 BASIC6.02□□□□□ -1.45
SNX9Q9Y5X1 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 MTHFD2P5-201ENST00000320415 844 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 RNU1-136P-201ENST00000384181 164 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 U3.25-201ENST00000391209 220 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC079355.1-201ENST00000421770 223 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 MTATP6P11-201ENST00000428071 670 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AL121776.1-201ENST00000429337 372 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 TRIM60P13-201ENST00000432350 1283 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 TMEM183AP1-205ENST00000432739 290 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AL390119.1-201ENST00000440329 312 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AL161722.1-201ENST00000446972 1032 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 EIF4A1P6-201ENST00000448133 1210 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 MTND3P4-201ENST00000453537 303 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC097486.1-201ENST00000515331 210 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC137627.1-201ENST00000545761 289 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC020923.1-201ENST00000624021 917 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC104820.1-201ENST00000624183 307 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AP005435.3-201ENST00000531260 3198 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 AC068870.1-201ENST00000563737 2455 ntBASIC6.01□□□□□ -1.45
SNX9Q9Y5X1 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC6□□□□□ -1.45
SNX9Q9Y5X1 KYNUP3-201ENST00000574386 1341 ntBASIC6□□□□□ -1.45
SNX9Q9Y5X1 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6□□□□□ -1.45
SNX9Q9Y5X1 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
SNX9Q9Y5X1 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6□□□□□ -1.45
SNX9Q9Y5X1 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6□□□□□ -1.45
SNX9Q9Y5X1 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC6□□□□□ -1.45
SNX9Q9Y5X1 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC6□□□□□ -1.45
SNX9Q9Y5X1 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
SNX9Q9Y5X1 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
SNX9Q9Y5X1 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6□□□□□ -1.45
SNX9Q9Y5X1 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
SNX9Q9Y5X1 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC6□□□□□ -1.45
SNX9Q9Y5X1 RNA5SP326-201ENST00000363209 110 ntBASIC6□□□□□ -1.45
SNX9Q9Y5X1 RN7SKP124-201ENST00000364730 341 ntBASIC6□□□□□ -1.45
SNX9Q9Y5X1 AC005042.1-201ENST00000393397 800 ntBASIC6□□□□□ -1.45
SNX9Q9Y5X1 DNAJA1P3-201ENST00000399417 1194 ntBASIC6□□□□□ -1.45
SNX9Q9Y5X1 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC6□□□□□ -1.45
SNX9Q9Y5X1 METTL15P3-201ENST00000415522 1221 ntBASIC6□□□□□ -1.45
SNX9Q9Y5X1 AL590399.2-201ENST00000427536 309 ntBASIC6□□□□□ -1.45
SNX9Q9Y5X1 AC242426.1-201ENST00000435270 960 ntBASIC6□□□□□ -1.45
SNX9Q9Y5X1 AC012075.1-201ENST00000436549 580 ntBASIC6□□□□□ -1.45
SNX9Q9Y5X1 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC6□□□□□ -1.45
SNX9Q9Y5X1 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC6□□□□□ -1.45
SNX9Q9Y5X1 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6□□□□□ -1.45
SNX9Q9Y5X1 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC6□□□□□ -1.45
SNX9Q9Y5X1 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC6□□□□□ -1.45
SNX9Q9Y5X1 TPRKBP1-201ENST00000456243 481 ntBASIC6□□□□□ -1.45
SNX9Q9Y5X1 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC6□□□□□ -1.45
SNX9Q9Y5X1 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms