Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
MSH6P52701 THAP12P4-201ENST00000528321 2266 ntBASIC7.6□□□□□ -1.19
MSH6P52701 DMD-205ENST00000359836 7339 ntTSL 5 BASIC7.6□□□□□ -1.19
MSH6P52701 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
MSH6P52701 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC7.6□□□□□ -1.19
MSH6P52701 OR4K12P-201ENST00000406538 961 ntBASIC7.59□□□□□ -1.19
MSH6P52701 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
MSH6P52701 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSH6P52701 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC7.59□□□□□ -1.19
MSH6P52701 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC7.59□□□□□ -1.19
MSH6P52701 DNAJC19P7-201ENST00000428811 344 ntBASIC7.59□□□□□ -1.19
MSH6P52701 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC7.59□□□□□ -1.19
MSH6P52701 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC7.59□□□□□ -1.19
MSH6P52701 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC7.59□□□□□ -1.19
MSH6P52701 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
MSH6P52701 HCG14-201ENST00000444986 413 ntTSL 2 BASIC7.59□□□□□ -1.19
MSH6P52701 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC7.59□□□□□ -1.19
MSH6P52701 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC7.59□□□□□ -1.19
MSH6P52701 AP002373.2-201ENST00000541631 1060 ntBASIC7.59□□□□□ -1.19
MSH6P52701 AL121594.2-201ENST00000541658 472 ntBASIC7.59□□□□□ -1.19
MSH6P52701 AC009117.1-201ENST00000563948 554 ntBASIC7.59□□□□□ -1.19
MSH6P52701 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC7.59□□□□□ -1.19
MSH6P52701 AC104687.2-201ENST00000604442 342 ntBASIC7.59□□□□□ -1.19
MSH6P52701 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSH6P52701 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC7.59□□□□□ -1.19
MSH6P52701 AL117378.2-201ENST00000622916 1337 ntBASIC7.59□□□□□ -1.19
MSH6P52701 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
MSH6P52701 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSH6P52701 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC7.59□□□□□ -1.19
MSH6P52701 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSH6P52701 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
MSH6P52701 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC7.59□□□□□ -1.19
MSH6P52701 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
MSH6P52701 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC7.59□□□□□ -1.19
MSH6P52701 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
MSH6P52701 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC7.59□□□□□ -1.19
MSH6P52701 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
MSH6P52701 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.2
MSH6P52701 RNA5SP505-201ENST00000364748 108 ntBASIC7.59□□□□□ -1.2
MSH6P52701 GAPDHP15-201ENST00000398586 975 ntBASIC7.59□□□□□ -1.2
MSH6P52701 MTCYBP21-201ENST00000443300 1113 ntBASIC7.59□□□□□ -1.2
MSH6P52701 AL513533.1-201ENST00000453728 415 ntBASIC7.59□□□□□ -1.2
MSH6P52701 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC7.59□□□□□ -1.2
MSH6P52701 AL445687.2-201ENST00000458156 728 ntBASIC7.59□□□□□ -1.2
MSH6P52701 CSNK1A1P3-201ENST00000504105 330 ntBASIC7.59□□□□□ -1.2
MSH6P52701 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC7.59□□□□□ -1.2
MSH6P52701 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC7.59□□□□□ -1.2
MSH6P52701 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC7.59□□□□□ -1.2
MSH6P52701 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSH6P52701 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSH6P52701 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC7.58□□□□□ -1.2
MSH6P52701 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSH6P52701 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
MSH6P52701 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSH6P52701 MT-RNR2-201ENST00000387347 1559 ntBASIC7.58□□□□□ -1.2
MSH6P52701 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSH6P52701 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSH6P52701 AC132825.1-201ENST00000463573 2247 ntBASIC7.58□□□□□ -1.2
MSH6P52701 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSH6P52701 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSH6P52701 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC7.58□□□□□ -1.2
MSH6P52701 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSH6P52701 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSH6P52701 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSH6P52701 RNU4-64P-201ENST00000410795 131 ntBASIC7.58□□□□□ -1.2
MSH6P52701 OR2AM1P-201ENST00000422137 422 ntBASIC7.58□□□□□ -1.2
MSH6P52701 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC7.58□□□□□ -1.2
MSH6P52701 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC7.58□□□□□ -1.2
MSH6P52701 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
MSH6P52701 GAPDHP25-201ENST00000447061 1001 ntBASIC7.58□□□□□ -1.2
MSH6P52701 AL451063.1-201ENST00000450164 1133 ntBASIC7.58□□□□□ -1.2
MSH6P52701 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC7.58□□□□□ -1.2
MSH6P52701 AC234781.3-201ENST00000452540 973 ntBASIC7.58□□□□□ -1.2
MSH6P52701 SLC25A51P1-201ENST00000468432 871 ntBASIC7.58□□□□□ -1.2
MSH6P52701 RN7SL354P-201ENST00000469282 294 ntBASIC7.58□□□□□ -1.2
MSH6P52701 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC7.58□□□□□ -1.2
MSH6P52701 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC7.58□□□□□ -1.2
MSH6P52701 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC7.58□□□□□ -1.2
MSH6P52701 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC7.58□□□□□ -1.2
MSH6P52701 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC7.58□□□□□ -1.2
MSH6P52701 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
MSH6P52701 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC7.58□□□□□ -1.2
MSH6P52701 DMD-202ENST00000343523 5623 ntTSL 5 BASIC7.57□□□□□ -1.2
MSH6P52701 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
MSH6P52701 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSH6P52701 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
MSH6P52701 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSH6P52701 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC7.57□□□□□ -1.2
MSH6P52701 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSH6P52701 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
MSH6P52701 SNORA70.2-201ENST00000364506 135 ntBASIC7.57□□□□□ -1.2
MSH6P52701 AC068538.1-201ENST00000376856 336 ntBASIC7.57□□□□□ -1.2
MSH6P52701 AL009179.1-201ENST00000406085 265 ntBASIC7.57□□□□□ -1.2
MSH6P52701 AC119751.6-201ENST00000416712 186 ntBASIC7.57□□□□□ -1.2
MSH6P52701 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC7.57□□□□□ -1.2
MSH6P52701 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC7.57□□□□□ -1.2
MSH6P52701 MEMO1P4-201ENST00000453590 386 ntBASIC7.57□□□□□ -1.2
MSH6P52701 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC7.57□□□□□ -1.2
MSH6P52701 AC139697.1-201ENST00000548429 745 ntBASIC7.57□□□□□ -1.2
MSH6P52701 AC018558.5-201ENST00000565840 952 ntBASIC7.57□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms