Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A1P20908 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A1P20908 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A1P20908 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A1P20908 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A1P20908 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.23□□□□□ -1.57
COL5A1P20908 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A1P20908 DBIP1-201ENST00000401435 260 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 RNGTTP1-201ENST00000420965 728 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 RPL34P27-201ENST00000428810 349 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.23□□□□□ -1.57
COL5A1P20908 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A1P20908 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.23□□□□□ -1.57
COL5A1P20908 H3F3BP1-201ENST00000440551 403 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 AC073648.4-201ENST00000442655 781 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 MED28P3-201ENST00000444288 531 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.23□□□□□ -1.57
COL5A1P20908 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.23□□□□□ -1.57
COL5A1P20908 NDUFA5P9-201ENST00000472609 340 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 RN7SKP147-201ENST00000517154 244 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.23□□□□□ -1.57
COL5A1P20908 AC092490.3-201ENST00000545370 572 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.23□□□□□ -1.57
COL5A1P20908 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.23□□□□□ -1.57
COL5A1P20908 AC005341.1-201ENST00000571086 708 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC5.23□□□□□ -1.57
COL5A1P20908 AP001267.4-201ENST00000602598 545 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 AC015712.7-201ENST00000615211 635 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 AC010435.1-201ENST00000623353 1177 ntBASIC5.23□□□□□ -1.57
COL5A1P20908 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.23□□□□□ -1.57
COL5A1P20908 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A1P20908 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
COL5A1P20908 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A1P20908 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
COL5A1P20908 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A1P20908 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A1P20908 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A1P20908 RNU1-146P-201ENST00000364015 165 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 RNF10P1-201ENST00000418589 369 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 AC245028.1-201ENST00000423259 256 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.22□□□□□ -1.57
COL5A1P20908 BX276092.6-201ENST00000430476 250 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.22□□□□□ -1.57
COL5A1P20908 AC092647.3-201ENST00000443044 633 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.22□□□□□ -1.57
COL5A1P20908 AC073072.2-201ENST00000447425 348 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.22□□□□□ -1.57
COL5A1P20908 BX276092.8-201ENST00000455722 250 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 RN7SL385P-201ENST00000468873 276 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 AC096741.1-201ENST00000472250 846 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 AC020898.1-201ENST00000474167 787 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.22□□□□□ -1.57
COL5A1P20908 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC5.22□□□□□ -1.57
COL5A1P20908 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.22□□□□□ -1.57
COL5A1P20908 AP005403.1-201ENST00000579720 229 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 RN7SL356P-201ENST00000582228 248 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.22□□□□□ -1.57
COL5A1P20908 AC234771.5-201ENST00000600161 514 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.22□□□□□ -1.57
COL5A1P20908 MIR7703-201ENST00000620784 77 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 AL353662.3-201ENST00000625131 237 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC5.22□□□□□ -1.57
COL5A1P20908 AC073869.10-201ENST00000642016 354 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
COL5A1P20908 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A1P20908 INTS6P1-201ENST00000504674 2530 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 AC034229.2-201ENST00000566945 2508 ntBASIC5.22□□□□□ -1.57
COL5A1P20908 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A1P20908 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A1P20908 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A1P20908 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A1P20908 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC5.22□□□□□ -1.57
COL5A1P20908 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
COL5A1P20908 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.57
COL5A1P20908 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL5A1P20908 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC5.21□□□□□ -1.57
COL5A1P20908 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.21□□□□□ -1.57
COL5A1P20908 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC5.21□□□□□ -1.57
COL5A1P20908 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC5.21□□□□□ -1.57
COL5A1P20908 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL5A1P20908 AC007114.2-201ENST00000576014 4281 ntBASIC5.21□□□□□ -1.57
COL5A1P20908 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL5A1P20908 HSPA8P14-201ENST00000552265 1805 ntBASIC5.21□□□□□ -1.57
COL5A1P20908 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
COL5A1P20908 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL5A1P20908 RN7SKP95-201ENST00000362860 303 ntBASIC5.21□□□□□ -1.58
COL5A1P20908 RNU1-136P-201ENST00000384181 164 ntBASIC5.21□□□□□ -1.58
COL5A1P20908 AL049745.1-201ENST00000433953 286 ntBASIC5.21□□□□□ -1.58
COL5A1P20908 GSTM5P1-201ENST00000434751 660 ntBASIC5.21□□□□□ -1.58
COL5A1P20908 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.21□□□□□ -1.58
COL5A1P20908 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.21□□□□□ -1.58
COL5A1P20908 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.21□□□□□ -1.58
COL5A1P20908 AC092647.2-201ENST00000452998 253 ntBASIC5.21□□□□□ -1.58
COL5A1P20908 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.21□□□□□ -1.58
COL5A1P20908 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.21□□□□□ -1.58
COL5A1P20908 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.21□□□□□ -1.58
COL5A1P20908 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.21□□□□□ -1.58
COL5A1P20908 AC112694.2-201ENST00000623697 768 ntBASIC5.21□□□□□ -1.58
COL5A1P20908 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.21□□□□□ -1.58
COL5A1P20908 AC005831.1-201ENST00000624384 1697 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms