Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Umpk-ps-201ENSMUST00000211897 827 ntBASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Gm37194-201ENSMUST00000193092 3031 ntBASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim54Q9ERP3 Phf7-203ENSMUST00000226565 1971 ntBASIC18.22■□□□□ 0.51
Trim54Q9ERP3 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim54Q9ERP3 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim54Q9ERP3 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim54Q9ERP3 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim54Q9ERP3 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Trim54Q9ERP3 Gm7153-201ENSMUST00000117092 455 ntBASIC18.22■□□□□ 0.51
Trim54Q9ERP3 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Trim54Q9ERP3 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim54Q9ERP3 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim54Q9ERP3 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim54Q9ERP3 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim54Q9ERP3 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Gm13186-201ENSMUST00000118031 316 ntBASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim54Q9ERP3 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Gm15794-201ENSMUST00000120182 631 ntBASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim54Q9ERP3 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Ighv6-1-201ENSMUST00000193612 343 ntBASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms