Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx56Q9D0R4 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx56Q9D0R4 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Ddx56Q9D0R4 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx56Q9D0R4 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx56Q9D0R4 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx56Q9D0R4 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
Ddx56Q9D0R4 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx56Q9D0R4 Gm13216-201ENSMUST00000117145 591 ntBASIC17.7■□□□□ 0.42
Ddx56Q9D0R4 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.7■□□□□ 0.42
Ddx56Q9D0R4 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Ddx56Q9D0R4 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC17.7■□□□□ 0.42
Ddx56Q9D0R4 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx56Q9D0R4 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 AC154855.1-201ENSMUST00000227353 1458 ntBASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.69■□□□□ 0.42
Ddx56Q9D0R4 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx56Q9D0R4 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Cxcl14-202ENSMUST00000224801 1467 ntBASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx56Q9D0R4 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms