Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
Trim11Q99PQ2 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Gm22240-201ENSMUST00000175225 82 ntBASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.18■□□□□ 0.66
Trim11Q99PQ2 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC19.18■□□□□ 0.66
Trim11Q99PQ2 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Gm36858-201ENSMUST00000194501 2391 ntBASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Gm10812-201ENSMUST00000099864 546 ntBASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim11Q99PQ2 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Gm18958-201ENSMUST00000174258 762 ntBASIC19.16■□□□□ 0.66
Trim11Q99PQ2 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Gm7791-201ENSMUST00000219066 539 ntBASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim11Q99PQ2 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Gm3375-201ENSMUST00000203929 796 ntBASIC19.15■□□□□ 0.66
Trim11Q99PQ2 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms