Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Gm38027-201ENSMUST00000192315 235 ntBASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Gm9103-201ENSMUST00000119371 405 ntBASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ushbp1Q8R370 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Gm2274-201ENSMUST00000184539 609 ntBASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Gm9731-201ENSMUST00000209480 747 ntBASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ushbp1Q8R370 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Gm7638-201ENSMUST00000121348 967 ntBASIC18.86■□□□□ 0.61
Ushbp1Q8R370 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Ank2-226ENSMUST00000189368 339 ntBASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC18.86■□□□□ 0.61
Ushbp1Q8R370 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC18.85■□□□□ 0.61
Ushbp1Q8R370 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Gm22697-201ENSMUST00000175194 63 ntBASIC18.85■□□□□ 0.61
Ushbp1Q8R370 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ushbp1Q8R370 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ushbp1Q8R370 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms