Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Gm6598-201ENSMUST00000202719 2615 ntBASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Trim47Q8C0E3 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim47Q8C0E3 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim47Q8C0E3 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim47Q8C0E3 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Trim47Q8C0E3 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC18.68■□□□□ 0.58
Trim47Q8C0E3 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC18.68■□□□□ 0.58
Trim47Q8C0E3 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim47Q8C0E3 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Trim47Q8C0E3 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Trim47Q8C0E3 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim47Q8C0E3 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim47Q8C0E3 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim47Q8C0E3 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
Trim47Q8C0E3 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Gm11336-201ENSMUST00000118168 334 ntBASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Gm11860-201ENSMUST00000122346 1010 ntBASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Gm29518-201ENSMUST00000190858 372 ntBASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Trim47Q8C0E3 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Gm45203-201ENSMUST00000206384 1831 ntBASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 AC154471.1-201ENSMUST00000224418 436 ntBASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim47Q8C0E3 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trim47Q8C0E3 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Trim47Q8C0E3 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 Mir770-201ENSMUST00000103252 94 ntBASIC18.64■□□□□ 0.57
Trim47Q8C0E3 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms