Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC23.11■■□□□ 1.29
Usp40Q8BWR4 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Usp40Q8BWR4 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC23.11■■□□□ 1.29
Usp40Q8BWR4 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Usp40Q8BWR4 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC23.11■■□□□ 1.29
Usp40Q8BWR4 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Usp40Q8BWR4 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Usp40Q8BWR4 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
Usp40Q8BWR4 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC23.11■■□□□ 1.29
Usp40Q8BWR4 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
Usp40Q8BWR4 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC23.1■■□□□ 1.29
Usp40Q8BWR4 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Usp40Q8BWR4 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Usp40Q8BWR4 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
Usp40Q8BWR4 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
Usp40Q8BWR4 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Usp40Q8BWR4 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
Usp40Q8BWR4 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Usp40Q8BWR4 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Usp40Q8BWR4 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Usp40Q8BWR4 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Usp40Q8BWR4 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Usp40Q8BWR4 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Usp40Q8BWR4 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC23.08■■□□□ 1.29
Usp40Q8BWR4 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Usp40Q8BWR4 AC153794.1-201ENSMUST00000169148 126 ntBASIC23.08■■□□□ 1.29
Usp40Q8BWR4 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC23.08■■□□□ 1.29
Usp40Q8BWR4 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Usp40Q8BWR4 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC23.08■■□□□ 1.29
Usp40Q8BWR4 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC23.08■■□□□ 1.29
Usp40Q8BWR4 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Usp40Q8BWR4 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Usp40Q8BWR4 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Usp40Q8BWR4 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC23.08■■□□□ 1.28
Usp40Q8BWR4 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.28
Usp40Q8BWR4 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
Usp40Q8BWR4 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Gm15372-201ENSMUST00000120729 834 ntBASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Usp40Q8BWR4 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC23.06■■□□□ 1.28
Usp40Q8BWR4 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp40Q8BWR4 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp40Q8BWR4 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Usp40Q8BWR4 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Usp40Q8BWR4 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp40Q8BWR4 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp40Q8BWR4 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp40Q8BWR4 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Usp40Q8BWR4 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Usp40Q8BWR4 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC23.05■■□□□ 1.28
Usp40Q8BWR4 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Usp40Q8BWR4 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Usp40Q8BWR4 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Usp40Q8BWR4 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Usp40Q8BWR4 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Gm43347-201ENSMUST00000200226 580 ntBASIC23.04■■□□□ 1.28
Usp40Q8BWR4 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp40Q8BWR4 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Usp40Q8BWR4 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp40Q8BWR4 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp40Q8BWR4 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp40Q8BWR4 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms