Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim28Q62318 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Trim28Q62318 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trim28Q62318 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC21.91■■□□□ 1.1
Trim28Q62318 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trim28Q62318 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trim28Q62318 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC21.91■■□□□ 1.1
Trim28Q62318 Gm7153-201ENSMUST00000117092 455 ntBASIC21.91■■□□□ 1.1
Trim28Q62318 Gm13312-201ENSMUST00000119631 718 ntBASIC21.91■■□□□ 1.1
Trim28Q62318 Gm15372-201ENSMUST00000120729 834 ntBASIC21.91■■□□□ 1.1
Trim28Q62318 Gm12895-201ENSMUST00000122214 226 ntBASIC21.91■■□□□ 1.1
Trim28Q62318 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
Trim28Q62318 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trim28Q62318 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trim28Q62318 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC21.91■■□□□ 1.1
Trim28Q62318 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
Trim28Q62318 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Trim28Q62318 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trim28Q62318 AC153794.1-201ENSMUST00000169148 126 ntBASIC21.9■■□□□ 1.1
Trim28Q62318 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC21.9■■□□□ 1.1
Trim28Q62318 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC21.9■■□□□ 1.1
Trim28Q62318 Gm44430-201ENSMUST00000203376 995 ntBASIC21.9■■□□□ 1.1
Trim28Q62318 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Trim28Q62318 Birc2-201ENSMUST00000054878 378 ntBASIC21.9■■□□□ 1.1
Trim28Q62318 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trim28Q62318 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trim28Q62318 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC21.9■■□□□ 1.1
Trim28Q62318 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trim28Q62318 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Trim28Q62318 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trim28Q62318 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
Trim28Q62318 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trim28Q62318 Slc35b2-202ENSMUST00000223987 1766 ntBASIC21.89■■□□□ 1.1
Trim28Q62318 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Trim28Q62318 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
Trim28Q62318 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Trim28Q62318 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Trim28Q62318 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trim28Q62318 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
Trim28Q62318 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Trim28Q62318 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC21.89■■□□□ 1.09
Trim28Q62318 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC21.89■■□□□ 1.09
Trim28Q62318 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trim28Q62318 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trim28Q62318 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trim28Q62318 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
Trim28Q62318 Gm45606-201ENSMUST00000209836 2795 ntBASIC21.89■■□□□ 1.09
Trim28Q62318 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Trim28Q62318 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
Trim28Q62318 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trim28Q62318 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Trim28Q62318 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
Trim28Q62318 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim28Q62318 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim28Q62318 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim28Q62318 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
Trim28Q62318 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim28Q62318 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim28Q62318 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim28Q62318 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Trim28Q62318 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim28Q62318 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim28Q62318 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC21.88■■□□□ 1.09
Trim28Q62318 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC21.88■■□□□ 1.09
Trim28Q62318 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim28Q62318 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
Trim28Q62318 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC21.87■■□□□ 1.09
Trim28Q62318 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim28Q62318 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim28Q62318 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
Trim28Q62318 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim28Q62318 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim28Q62318 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Trim28Q62318 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim28Q62318 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim28Q62318 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC21.87■■□□□ 1.09
Trim28Q62318 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim28Q62318 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Trim28Q62318 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trim28Q62318 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trim28Q62318 Gm24589-201ENSMUST00000116692 94 ntBASIC21.86■■□□□ 1.09
Trim28Q62318 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Trim28Q62318 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Trim28Q62318 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trim28Q62318 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC21.86■■□□□ 1.09
Trim28Q62318 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC21.86■■□□□ 1.09
Trim28Q62318 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trim28Q62318 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC21.86■■□□□ 1.09
Trim28Q62318 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC21.85■■□□□ 1.09
Trim28Q62318 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Trim28Q62318 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Trim28Q62318 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trim28Q62318 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC21.85■■□□□ 1.09
Trim28Q62318 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trim28Q62318 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trim28Q62318 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC21.85■■□□□ 1.09
Trim28Q62318 Gm10052-201ENSMUST00000168019 960 ntBASIC21.85■■□□□ 1.09
Trim28Q62318 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC21.85■■□□□ 1.09
Trim28Q62318 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC21.85■■□□□ 1.09
Trim28Q62318 Gm7729-201ENSMUST00000050143 801 ntBASIC21.85■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 80.4 ms