Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Ccdc88aQ5SNZ0 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc88aQ5SNZ0 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc88aQ5SNZ0 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc88aQ5SNZ0 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC19.34■□□□□ 0.69
Ccdc88aQ5SNZ0 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Ccdc88aQ5SNZ0 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc88aQ5SNZ0 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC19.34■□□□□ 0.69
Ccdc88aQ5SNZ0 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Ccdc88aQ5SNZ0 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc88aQ5SNZ0 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc88aQ5SNZ0 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc88aQ5SNZ0 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc88aQ5SNZ0 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc88aQ5SNZ0 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc88aQ5SNZ0 AC122351.1-201ENSMUST00000220467 126 ntBASIC19.33■□□□□ 0.69
Ccdc88aQ5SNZ0 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc88aQ5SNZ0 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc88aQ5SNZ0 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm11336-201ENSMUST00000118168 334 ntBASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 Rps4l-201ENSMUST00000071745 943 ntBASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc88aQ5SNZ0 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 AC161829.1-201ENSMUST00000220298 281 ntBASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc88aQ5SNZ0 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc88aQ5SNZ0 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc88aQ5SNZ0 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC19.31■□□□□ 0.68
Ccdc88aQ5SNZ0 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Ccdc88aQ5SNZ0 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Ccdc88aQ5SNZ0 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.31■□□□□ 0.68
Ccdc88aQ5SNZ0 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc88aQ5SNZ0 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc88aQ5SNZ0 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Ccdc88aQ5SNZ0 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc88aQ5SNZ0 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Ccdc88aQ5SNZ0 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm11594-201ENSMUST00000122313 162 ntBASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm45203-201ENSMUST00000206384 1831 ntBASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc88aQ5SNZ0 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Ccdc88aQ5SNZ0 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc88aQ5SNZ0 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm13186-201ENSMUST00000118031 316 ntBASIC19.29■□□□□ 0.68
Ccdc88aQ5SNZ0 Gm44450-201ENSMUST00000199528 114 ntBASIC19.29■□□□□ 0.68
Ccdc88aQ5SNZ0 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc88aQ5SNZ0 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms