Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
Col8a1Q00780 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col8a1Q00780 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Col8a1Q00780 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC14.34□□□□□ -0.11
Col8a1Q00780 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.34□□□□□ -0.11
Col8a1Q00780 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Gm43575-201ENSMUST00000196420 516 ntBASIC14.34□□□□□ -0.11
Col8a1Q00780 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC14.34□□□□□ -0.11
Col8a1Q00780 Rps4l-201ENSMUST00000071745 943 ntBASIC14.34□□□□□ -0.11
Col8a1Q00780 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col8a1Q00780 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Zkscan4-202ENSMUST00000225845 1506 ntBASIC14.34□□□□□ -0.11
Col8a1Q00780 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col8a1Q00780 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Col8a1Q00780 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Col8a1Q00780 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col8a1Q00780 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col8a1Q00780 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col8a1Q00780 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Col8a1Q00780 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Col8a1Q00780 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC14.33□□□□□ -0.12
Col8a1Q00780 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC14.33□□□□□ -0.12
Col8a1Q00780 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Gm6376-201ENSMUST00000209407 580 ntBASIC14.33□□□□□ -0.12
Col8a1Q00780 Gm5364-201ENSMUST00000216789 889 ntBASIC14.33□□□□□ -0.12
Col8a1Q00780 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Col8a1Q00780 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Gm42922-201ENSMUST00000195887 2078 ntBASIC14.33□□□□□ -0.12
Col8a1Q00780 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Col8a1Q00780 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col8a1Q00780 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Col8a1Q00780 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC14.32□□□□□ -0.12
Col8a1Q00780 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC14.32□□□□□ -0.12
Col8a1Q00780 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC14.32□□□□□ -0.12
Col8a1Q00780 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC14.32□□□□□ -0.12
Col8a1Q00780 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC14.32□□□□□ -0.12
Col8a1Q00780 Cmtm5-203ENSMUST00000227441 610 ntBASIC14.32□□□□□ -0.12
Col8a1Q00780 AC159093.1-201ENSMUST00000227779 380 ntBASIC14.32□□□□□ -0.12
Col8a1Q00780 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Col8a1Q00780 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC14.32□□□□□ -0.12
Col8a1Q00780 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col8a1Q00780 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col8a1Q00780 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col8a1Q00780 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col8a1Q00780 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col8a1Q00780 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Col8a1Q00780 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col8a1Q00780 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC14.31□□□□□ -0.12
Col8a1Q00780 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Col8a1Q00780 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col8a1Q00780 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC14.31□□□□□ -0.12
Col8a1Q00780 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col8a1Q00780 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
Col8a1Q00780 Gm5264-201ENSMUST00000190584 848 ntBASIC14.31□□□□□ -0.12
Col8a1Q00780 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms