Protein–RNA interactions for Protein: P97334

Nkx2-3, Homeobox protein Nkx-2.3, mousemouse

Predictions only

Length 362 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-3P97334 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Nkx2-3P97334 Rarb-207ENSMUST00000225921 2756 ntBASIC21.24■□□□□ 0.99
Nkx2-3P97334 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nkx2-3P97334 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC21.24■□□□□ 0.99
Nkx2-3P97334 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC21.24■□□□□ 0.99
Nkx2-3P97334 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC21.24■□□□□ 0.99
Nkx2-3P97334 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Nkx2-3P97334 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC21.24■□□□□ 0.99
Nkx2-3P97334 Cmtm5-203ENSMUST00000227441 610 ntBASIC21.24■□□□□ 0.99
Nkx2-3P97334 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nkx2-3P97334 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nkx2-3P97334 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC21.24■□□□□ 0.99
Nkx2-3P97334 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx2-3P97334 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx2-3P97334 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-3P97334 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-3P97334 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-3P97334 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-3P97334 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-3P97334 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-3P97334 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Nkx2-3P97334 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-3P97334 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC21.22■□□□□ 0.99
Nkx2-3P97334 AC108846.1-201ENSMUST00000214531 513 ntBASIC21.22■□□□□ 0.99
Nkx2-3P97334 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-3P97334 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-3P97334 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-3P97334 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-3P97334 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx2-3P97334 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx2-3P97334 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx2-3P97334 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx2-3P97334 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx2-3P97334 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx2-3P97334 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx2-3P97334 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Nkx2-3P97334 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
Nkx2-3P97334 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Nkx2-3P97334 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC21.2■□□□□ 0.98
Nkx2-3P97334 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Gm6443-201ENSMUST00000203599 874 ntBASIC21.2■□□□□ 0.98
Nkx2-3P97334 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC21.2■□□□□ 0.98
Nkx2-3P97334 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-3P97334 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-3P97334 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-3P97334 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC21.19■□□□□ 0.98
Nkx2-3P97334 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
Nkx2-3P97334 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC21.19■□□□□ 0.98
Nkx2-3P97334 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC21.19■□□□□ 0.98
Nkx2-3P97334 Gm43514-201ENSMUST00000198852 424 ntBASIC21.19■□□□□ 0.98
Nkx2-3P97334 Gm8969-201ENSMUST00000199694 526 ntBASIC21.19■□□□□ 0.98
Nkx2-3P97334 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-3P97334 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-3P97334 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-3P97334 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC21.19■□□□□ 0.98
Nkx2-3P97334 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC21.19■□□□□ 0.98
Nkx2-3P97334 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-3P97334 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-3P97334 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-3P97334 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Nkx2-3P97334 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-3P97334 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-3P97334 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-3P97334 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-3P97334 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-3P97334 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-3P97334 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Nkx2-3P97334 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-3P97334 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-3P97334 Gm10052-201ENSMUST00000168019 960 ntBASIC21.18■□□□□ 0.98
Nkx2-3P97334 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms