Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx3P48381 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx3P48381 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Rfx3P48381 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx3P48381 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx3P48381 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx3P48381 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx3P48381 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx3P48381 Gm26596-201ENSMUST00000180464 2655 ntBASIC15.25■□□□□ 0.03
Rfx3P48381 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx3P48381 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx3P48381 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Rfx3P48381 Gm5643-201ENSMUST00000117081 966 ntBASIC15.25■□□□□ 0.03
Rfx3P48381 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Rfx3P48381 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx3P48381 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx3P48381 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx3P48381 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx3P48381 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Rfx3P48381 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx3P48381 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx3P48381 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx3P48381 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx3P48381 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC15.25■□□□□ 0.03
Rfx3P48381 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Rfx3P48381 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC15.24■□□□□ 0.03
Rfx3P48381 Gm15378-201ENSMUST00000121894 207 ntBASIC15.24■□□□□ 0.03
Rfx3P48381 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC15.24■□□□□ 0.03
Rfx3P48381 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Rfx3P48381 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx3P48381 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC15.23■□□□□ 0.03
Rfx3P48381 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC15.23■□□□□ 0.03
Rfx3P48381 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Gm8520-201ENSMUST00000186517 868 ntBASIC15.23■□□□□ 0.03
Rfx3P48381 Gm43183-201ENSMUST00000200632 547 ntBASIC15.23■□□□□ 0.03
Rfx3P48381 Gm4974-201ENSMUST00000209974 875 ntBASIC15.23■□□□□ 0.03
Rfx3P48381 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC15.23■□□□□ 0.03
Rfx3P48381 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Rfx3P48381 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx3P48381 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
Rfx3P48381 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Gm19721-201ENSMUST00000195284 1764 ntBASIC15.22■□□□□ 0.03
Rfx3P48381 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Rfx3P48381 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Rfx3P48381 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 AC124581.1-201ENSMUST00000225416 1399 ntBASIC15.22■□□□□ 0.03
Rfx3P48381 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx3P48381 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx3P48381 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Rfx3P48381 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx3P48381 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx3P48381 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx3P48381 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms