Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx1P48377 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Rfx1P48377 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx1P48377 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC20.2■□□□□ 0.82
Rfx1P48377 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx1P48377 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Rfx1P48377 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
Rfx1P48377 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx1P48377 Gm15375-201ENSMUST00000119510 849 ntBASIC20.2■□□□□ 0.82
Rfx1P48377 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx1P48377 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Rfx1P48377 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC20.2■□□□□ 0.82
Rfx1P48377 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx1P48377 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx1P48377 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx1P48377 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Rfx1P48377 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx1P48377 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Rfx1P48377 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC20.19■□□□□ 0.82
Rfx1P48377 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Rfx1P48377 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
Rfx1P48377 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.19■□□□□ 0.82
Rfx1P48377 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Rfx1P48377 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx1P48377 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx1P48377 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx1P48377 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx1P48377 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx1P48377 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx1P48377 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
Rfx1P48377 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx1P48377 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Rfx1P48377 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.18■□□□□ 0.82
Rfx1P48377 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx1P48377 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.18■□□□□ 0.82
Rfx1P48377 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx1P48377 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx1P48377 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx1P48377 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Rfx1P48377 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Rfx1P48377 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx1P48377 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx1P48377 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx1P48377 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx1P48377 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx1P48377 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx1P48377 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.17■□□□□ 0.82
Rfx1P48377 Gm4968-201ENSMUST00000071458 858 ntBASIC20.17■□□□□ 0.82
Rfx1P48377 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx1P48377 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Rfx1P48377 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx1P48377 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx1P48377 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx1P48377 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Rfx1P48377 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.17■□□□□ 0.82
Rfx1P48377 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Rfx1P48377 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx1P48377 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx1P48377 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx1P48377 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Rfx1P48377 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx1P48377 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx1P48377 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx1P48377 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx1P48377 Gm2559-201ENSMUST00000201323 363 ntBASIC20.16■□□□□ 0.82
Rfx1P48377 AC069562.2-201ENSMUST00000224644 2146 ntBASIC20.16■□□□□ 0.82
Rfx1P48377 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx1P48377 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Rfx1P48377 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx1P48377 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Rfx1P48377 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx1P48377 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx1P48377 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx1P48377 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx1P48377 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Rfx1P48377 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx1P48377 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rfx1P48377 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rfx1P48377 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rfx1P48377 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rfx1P48377 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rfx1P48377 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC20.15■□□□□ 0.82
Rfx1P48377 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rfx1P48377 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rfx1P48377 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms