Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col2a1P28481 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Col2a1P28481 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col2a1P28481 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Col2a1P28481 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Col2a1P28481 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC19.1■□□□□ 0.65
Col2a1P28481 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col2a1P28481 Gm7935-201ENSMUST00000100555 1278 ntBASIC19.09■□□□□ 0.65
Col2a1P28481 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC19.09■□□□□ 0.65
Col2a1P28481 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC19.09■□□□□ 0.65
Col2a1P28481 Gm28659-201ENSMUST00000188013 759 ntBASIC19.09■□□□□ 0.65
Col2a1P28481 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
Col2a1P28481 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col2a1P28481 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col2a1P28481 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.09■□□□□ 0.65
Col2a1P28481 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Col2a1P28481 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Col2a1P28481 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col2a1P28481 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col2a1P28481 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Col2a1P28481 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col2a1P28481 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col2a1P28481 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col2a1P28481 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col2a1P28481 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC19.09■□□□□ 0.65
Col2a1P28481 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC19.09■□□□□ 0.65
Col2a1P28481 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col2a1P28481 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col2a1P28481 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Col2a1P28481 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Col2a1P28481 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Col2a1P28481 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
Col2a1P28481 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Col2a1P28481 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC19.08■□□□□ 0.65
Col2a1P28481 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col2a1P28481 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Col2a1P28481 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Col2a1P28481 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col2a1P28481 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
Col2a1P28481 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col2a1P28481 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col2a1P28481 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col2a1P28481 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col2a1P28481 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col2a1P28481 Gm9889-202ENSMUST00000206983 1577 ntBASIC19.08■□□□□ 0.64
Col2a1P28481 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col2a1P28481 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Col2a1P28481 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Col2a1P28481 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col2a1P28481 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col2a1P28481 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col2a1P28481 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Col2a1P28481 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col2a1P28481 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Col2a1P28481 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col2a1P28481 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col2a1P28481 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col2a1P28481 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC19.07■□□□□ 0.64
Col2a1P28481 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
Col2a1P28481 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Col2a1P28481 Mzt1-203ENSMUST00000227948 952 ntBASIC19.07■□□□□ 0.64
Col2a1P28481 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col2a1P28481 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col2a1P28481 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC19.06■□□□□ 0.64
Col2a1P28481 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
Col2a1P28481 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col2a1P28481 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col2a1P28481 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col2a1P28481 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col2a1P28481 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col2a1P28481 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC19.06■□□□□ 0.64
Col2a1P28481 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC19.06■□□□□ 0.64
Col2a1P28481 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col2a1P28481 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col2a1P28481 Rps4l-201ENSMUST00000071745 943 ntBASIC19.06■□□□□ 0.64
Col2a1P28481 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col2a1P28481 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col2a1P28481 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col2a1P28481 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col2a1P28481 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Col2a1P28481 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col2a1P28481 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col2a1P28481 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC19.05■□□□□ 0.64
Col2a1P28481 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC19.05■□□□□ 0.64
Col2a1P28481 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC19.05■□□□□ 0.64
Col2a1P28481 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col2a1P28481 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC19.05■□□□□ 0.64
Col2a1P28481 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC19.05■□□□□ 0.64
Col2a1P28481 AC133598.3-202ENSMUST00000224219 531 ntBASIC19.05■□□□□ 0.64
Col2a1P28481 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Col2a1P28481 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC19.05■□□□□ 0.64
Col2a1P28481 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC19.05■□□□□ 0.64
Col2a1P28481 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col2a1P28481 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col2a1P28481 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.05■□□□□ 0.64
Col2a1P28481 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col2a1P28481 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col2a1P28481 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
Col2a1P28481 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Col2a1P28481 Gm27867-201ENSMUST00000184778 125 ntBASIC19.04■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms