Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RaraP11416 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RaraP11416 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RaraP11416 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
RaraP11416 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.24■□□□□ 0.51
RaraP11416 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.24■□□□□ 0.51
RaraP11416 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
RaraP11416 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RaraP11416 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC18.24■□□□□ 0.51
RaraP11416 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RaraP11416 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RaraP11416 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RaraP11416 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RaraP11416 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
RaraP11416 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
RaraP11416 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC18.23■□□□□ 0.51
RaraP11416 Gm27000-201ENSMUST00000182943 842 ntBASIC18.23■□□□□ 0.51
RaraP11416 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 AC107711.5-202ENSMUST00000226429 702 ntBASIC18.23■□□□□ 0.51
RaraP11416 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC18.23■□□□□ 0.51
RaraP11416 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RaraP11416 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC18.22■□□□□ 0.51
RaraP11416 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
RaraP11416 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC18.22■□□□□ 0.51
RaraP11416 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.22■□□□□ 0.51
RaraP11416 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
RaraP11416 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC18.22■□□□□ 0.51
RaraP11416 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.22■□□□□ 0.51
RaraP11416 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC18.22■□□□□ 0.51
RaraP11416 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
RaraP11416 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC18.22■□□□□ 0.51
RaraP11416 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC18.22■□□□□ 0.51
RaraP11416 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
RaraP11416 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
RaraP11416 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
RaraP11416 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RaraP11416 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
RaraP11416 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
RaraP11416 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.21■□□□□ 0.51
RaraP11416 Gm7638-201ENSMUST00000121348 967 ntBASIC18.21■□□□□ 0.51
RaraP11416 Gm10653-202ENSMUST00000139570 835 ntBASIC18.21■□□□□ 0.51
RaraP11416 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18.21■□□□□ 0.51
RaraP11416 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
RaraP11416 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RaraP11416 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.5
RaraP11416 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 Gm9731-201ENSMUST00000209480 747 ntBASIC18.2■□□□□ 0.5
RaraP11416 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.2■□□□□ 0.5
RaraP11416 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RaraP11416 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 79 ms