Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm4535-201ENSMUST00000182274 558 ntBASIC19.71■□□□□ 0.75
Col1a1P11087 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 Gm10355-201ENSMUST00000097146 517 ntBASIC19.71■□□□□ 0.75
Col1a1P11087 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Col1a1P11087 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC19.71■□□□□ 0.75
Col1a1P11087 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col1a1P11087 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC19.7■□□□□ 0.74
Col1a1P11087 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Col1a1P11087 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col1a1P11087 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col1a1P11087 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col1a1P11087 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col1a1P11087 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC19.7■□□□□ 0.74
Col1a1P11087 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col1a1P11087 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col1a1P11087 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Col1a1P11087 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC19.69■□□□□ 0.74
Col1a1P11087 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col1a1P11087 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC19.69■□□□□ 0.74
Col1a1P11087 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col1a1P11087 Gm42670-201ENSMUST00000201816 1292 ntBASIC19.69■□□□□ 0.74
Col1a1P11087 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC19.69■□□□□ 0.74
Col1a1P11087 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col1a1P11087 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col1a1P11087 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col1a1P11087 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col1a1P11087 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col1a1P11087 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col1a1P11087 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col1a1P11087 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC19.69■□□□□ 0.74
Col1a1P11087 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC19.69■□□□□ 0.74
Col1a1P11087 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC19.69■□□□□ 0.74
Col1a1P11087 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.68■□□□□ 0.74
Col1a1P11087 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col1a1P11087 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col1a1P11087 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Col1a1P11087 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Col1a1P11087 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC19.68■□□□□ 0.74
Col1a1P11087 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col1a1P11087 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC19.68■□□□□ 0.74
Col1a1P11087 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Col1a1P11087 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col1a1P11087 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col1a1P11087 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col1a1P11087 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col1a1P11087 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col1a1P11087 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col1a1P11087 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col1a1P11087 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC19.68■□□□□ 0.74
Col1a1P11087 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col1a1P11087 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC19.67■□□□□ 0.74
Col1a1P11087 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC19.67■□□□□ 0.74
Col1a1P11087 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC19.67■□□□□ 0.74
Col1a1P11087 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
Col1a1P11087 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Col1a1P11087 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Gfra2-202ENSMUST00000227633 1480 ntBASIC19.67■□□□□ 0.74
Col1a1P11087 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Gm13418-201ENSMUST00000119097 944 ntBASIC19.67■□□□□ 0.74
Col1a1P11087 Gm25745-201ENSMUST00000174945 133 ntBASIC19.67■□□□□ 0.74
Col1a1P11087 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC19.67■□□□□ 0.74
Col1a1P11087 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC19.67■□□□□ 0.74
Col1a1P11087 AC127349.1-201ENSMUST00000224590 266 ntBASIC19.67■□□□□ 0.74
Col1a1P11087 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col1a1P11087 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Col1a1P11087 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Col1a1P11087 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col1a1P11087 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Col1a1P11087 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.66■□□□□ 0.74
Col1a1P11087 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col1a1P11087 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col1a1P11087 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Col1a1P11087 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC19.66■□□□□ 0.74
Col1a1P11087 Gm6736-201ENSMUST00000166583 948 ntBASIC19.66■□□□□ 0.74
Col1a1P11087 Gm2756-201ENSMUST00000195851 400 ntBASIC19.66■□□□□ 0.74
Col1a1P11087 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col1a1P11087 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col1a1P11087 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col1a1P11087 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col1a1P11087 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col1a1P11087 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms