Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col3a1P08121 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC20.09■□□□□ 0.81
Col3a1P08121 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col3a1P08121 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col3a1P08121 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC20.09■□□□□ 0.81
Col3a1P08121 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col3a1P08121 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col3a1P08121 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col3a1P08121 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col3a1P08121 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col3a1P08121 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC20.09■□□□□ 0.81
Col3a1P08121 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Col3a1P08121 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col3a1P08121 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col3a1P08121 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col3a1P08121 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col3a1P08121 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col3a1P08121 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col3a1P08121 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Col3a1P08121 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col3a1P08121 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col3a1P08121 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC20.08■□□□□ 0.81
Col3a1P08121 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
Col3a1P08121 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Col3a1P08121 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col3a1P08121 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
Col3a1P08121 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col3a1P08121 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC20.08■□□□□ 0.8
Col3a1P08121 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col3a1P08121 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col3a1P08121 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col3a1P08121 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col3a1P08121 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Col3a1P08121 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC20.07■□□□□ 0.8
Col3a1P08121 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC20.07■□□□□ 0.8
Col3a1P08121 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Col3a1P08121 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC20.07■□□□□ 0.8
Col3a1P08121 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col3a1P08121 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col3a1P08121 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
Col3a1P08121 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Col3a1P08121 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col3a1P08121 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col3a1P08121 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Col3a1P08121 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col3a1P08121 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col3a1P08121 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC20.06■□□□□ 0.8
Col3a1P08121 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col3a1P08121 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col3a1P08121 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Col3a1P08121 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col3a1P08121 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col3a1P08121 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC20.06■□□□□ 0.8
Col3a1P08121 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col3a1P08121 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col3a1P08121 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col3a1P08121 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col3a1P08121 Gm5898-201ENSMUST00000121016 2071 ntBASIC20.06■□□□□ 0.8
Col3a1P08121 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col3a1P08121 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col3a1P08121 Gm43514-201ENSMUST00000198852 424 ntBASIC20.05■□□□□ 0.8
Col3a1P08121 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col3a1P08121 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col3a1P08121 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col3a1P08121 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col3a1P08121 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col3a1P08121 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col3a1P08121 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col3a1P08121 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col3a1P08121 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC20.05■□□□□ 0.8
Col3a1P08121 Gm13884-201ENSMUST00000118103 829 ntBASIC20.05■□□□□ 0.8
Col3a1P08121 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col3a1P08121 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC20.05■□□□□ 0.8
Col3a1P08121 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
Col3a1P08121 Gm43347-201ENSMUST00000200226 580 ntBASIC20.05■□□□□ 0.8
Col3a1P08121 CT009713.7-201ENSMUST00000224689 571 ntBASIC20.05■□□□□ 0.8
Col3a1P08121 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col3a1P08121 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col3a1P08121 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col3a1P08121 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col3a1P08121 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col3a1P08121 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col3a1P08121 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC20.04■□□□□ 0.8
Col3a1P08121 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col3a1P08121 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col3a1P08121 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC20.04■□□□□ 0.8
Col3a1P08121 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col3a1P08121 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC20.04■□□□□ 0.8
Col3a1P08121 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Col3a1P08121 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC20.04■□□□□ 0.8
Col3a1P08121 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC20.04■□□□□ 0.8
Col3a1P08121 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col3a1P08121 Gm42900-201ENSMUST00000197184 2167 ntBASIC20.04■□□□□ 0.8
Col3a1P08121 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms