Protein–RNA interactions for Protein: O88834

Shd, SH2 domain-containing adapter protein D, mousemouse

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShdO88834 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ShdO88834 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ShdO88834 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
ShdO88834 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ShdO88834 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShdO88834 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ShdO88834 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShdO88834 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShdO88834 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShdO88834 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShdO88834 Gm36858-201ENSMUST00000194501 2391 ntBASIC17.23■□□□□ 0.35
ShdO88834 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.23■□□□□ 0.35
ShdO88834 Gm26596-201ENSMUST00000180464 2655 ntBASIC17.23■□□□□ 0.35
ShdO88834 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ShdO88834 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShdO88834 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShdO88834 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ShdO88834 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
ShdO88834 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
ShdO88834 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.22■□□□□ 0.35
ShdO88834 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShdO88834 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShdO88834 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShdO88834 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShdO88834 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
ShdO88834 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShdO88834 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.22■□□□□ 0.35
ShdO88834 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShdO88834 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.22■□□□□ 0.35
ShdO88834 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.21■□□□□ 0.35
ShdO88834 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ShdO88834 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ShdO88834 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ShdO88834 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ShdO88834 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ShdO88834 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
ShdO88834 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC17.21■□□□□ 0.35
ShdO88834 Gm43799-201ENSMUST00000201845 579 ntBASIC17.21■□□□□ 0.35
ShdO88834 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
ShdO88834 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.21■□□□□ 0.35
ShdO88834 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
ShdO88834 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ShdO88834 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ShdO88834 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
ShdO88834 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC17.21■□□□□ 0.34
ShdO88834 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
ShdO88834 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
ShdO88834 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
ShdO88834 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
ShdO88834 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
ShdO88834 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
ShdO88834 Gm7370-201ENSMUST00000219471 767 ntBASIC17.2■□□□□ 0.34
ShdO88834 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
ShdO88834 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
ShdO88834 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.2■□□□□ 0.34
ShdO88834 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
ShdO88834 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ShdO88834 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 AC154855.1-201ENSMUST00000227353 1458 ntBASIC17.19■□□□□ 0.34
ShdO88834 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.19■□□□□ 0.34
ShdO88834 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Gm13559-201ENSMUST00000120476 863 ntBASIC17.19■□□□□ 0.34
ShdO88834 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
ShdO88834 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.19■□□□□ 0.34
ShdO88834 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ShdO88834 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ShdO88834 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.18■□□□□ 0.34
ShdO88834 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
ShdO88834 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC17.18■□□□□ 0.34
ShdO88834 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ShdO88834 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ShdO88834 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ShdO88834 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC17.18■□□□□ 0.34
ShdO88834 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ShdO88834 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms