Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPSAP65-201ENST00000429660 595 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 AL353662.1-201ENST00000439099 327 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 RPL6P30-201ENST00000443382 862 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 RPS23P9-201ENST00000448848 438 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 HGF-207ENST00000453018 721 ntTSL 3 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 PPIAP7-201ENST00000454070 489 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 Z83838.1-202ENST00000456225 839 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC009879.1-201ENST00000520029 839 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 AP000620.1-201ENST00000527147 504 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC090888.3-201ENST00000558917 509 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 AC124916.2-201ENST00000604416 224 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 FAM27E2-201ENST00000619668 403 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 AP001962.1-201ENST00000624114 559 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 FTO-203ENST00000460382 1517 ntTSL 5 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 ADAM24P-201ENST00000398655 2101 ntBASIC5.02□□□□□ -1.61
NKX3-1Q99801 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
NKX3-1Q99801 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.02□□□□□ -1.61
NKX3-1Q99801 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
NKX3-1Q99801 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC093225.1-201ENST00000506867 1408 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
NKX3-1Q99801 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
NKX3-1Q99801 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
NKX3-1Q99801 MIR133A2-201ENST00000347538 102 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
NKX3-1Q99801 RNA5SP453-201ENST00000362503 119 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
NKX3-1Q99801 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC009506.2-201ENST00000420635 840 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 CR848007.2-201ENST00000424918 787 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AL590762.3-201ENST00000436372 640 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 EIF5AP4-201ENST00000441206 465 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
NKX3-1Q99801 RPS10P18-201ENST00000442662 495 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC093166.4-201ENST00000457867 318 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC068228.1-201ENST00000461723 211 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC026782.2-201ENST00000510845 636 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC097486.1-201ENST00000515331 210 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 SNORA70.11-201ENST00000515987 138 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 SNORA70.13-201ENST00000516116 138 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 NPM1P52-201ENST00000518264 846 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC068768.2-201ENST00000602352 343 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 AL138895.2-201ENST00000603019 178 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC002069.2-201ENST00000603580 883 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 RPL21P136-201ENST00000605378 396 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 AL136370.1-201ENST00000608166 691 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC092574.1-201ENST00000609771 420 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC096708.4-201ENST00000620563 552 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 AC073488.3-201ENST00000631611 778 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
NKX3-1Q99801 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
NKX3-1Q99801 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
NKX3-1Q99801 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 543.9 ms