Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX1P39880 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC9.05□□□□□ -0.96
CUX1P39880 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC9.05□□□□□ -0.96
CUX1P39880 AC068790.7-201ENST00000602347 528 ntBASIC9.05□□□□□ -0.96
CUX1P39880 AC087283.1-201ENST00000604029 1074 ntBASIC9.05□□□□□ -0.96
CUX1P39880 AL133481.2-203ENST00000607558 139 ntBASIC9.05□□□□□ -0.96
CUX1P39880 AP003789.1-201ENST00000617737 605 ntBASIC9.05□□□□□ -0.96
CUX1P39880 MAPK10-350ENST00000641777 965 ntBASIC9.05□□□□□ -0.96
CUX1P39880 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC9.04□□□□□ -0.96
CUX1P39880 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC9.04□□□□□ -0.96
CUX1P39880 AC092747.4-201ENST00000620519 1861 ntBASIC9.04□□□□□ -0.96
CUX1P39880 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
CUX1P39880 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC9.04□□□□□ -0.96
CUX1P39880 RN7SKP149-201ENST00000363008 344 ntBASIC9.04□□□□□ -0.96
CUX1P39880 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC9.04□□□□□ -0.96
CUX1P39880 CHMP1B2P-201ENST00000399581 597 ntBASIC9.04□□□□□ -0.96
CUX1P39880 AC019050.1-201ENST00000418508 492 ntBASIC9.04□□□□□ -0.96
CUX1P39880 AC245028.1-201ENST00000423259 256 ntBASIC9.04□□□□□ -0.96
CUX1P39880 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC9.04□□□□□ -0.96
CUX1P39880 DAP3-209ENST00000465375 729 ntTSL 2 BASIC9.04□□□□□ -0.96
CUX1P39880 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC9.04□□□□□ -0.96
CUX1P39880 RPL7P16-201ENST00000479738 738 ntBASIC9.04□□□□□ -0.96
CUX1P39880 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC9.04□□□□□ -0.96
CUX1P39880 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC9.04□□□□□ -0.96
CUX1P39880 snoU109.5-201ENST00000516231 132 ntBASIC9.04□□□□□ -0.96
CUX1P39880 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC9.04□□□□□ -0.96
CUX1P39880 AP005432.2-201ENST00000608162 586 ntBASIC9.04□□□□□ -0.96
CUX1P39880 AP003175.1-201ENST00000641383 6658 ntBASIC9.04□□□□□ -0.96
CUX1P39880 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC9.04□□□□□ -0.96
CUX1P39880 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC9.04□□□□□ -0.96
CUX1P39880 THAP12P4-201ENST00000528321 2266 ntBASIC9.03□□□□□ -0.96
CUX1P39880 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC9.03□□□□□ -0.96
CUX1P39880 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC9.03□□□□□ -0.96
CUX1P39880 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC9.03□□□□□ -0.96
CUX1P39880 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC9.03□□□□□ -0.96
CUX1P39880 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC9.03□□□□□ -0.96
CUX1P39880 HSPD1P8-201ENST00000400121 1658 ntBASIC9.03□□□□□ -0.96
CUX1P39880 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC9.03□□□□□ -0.96
CUX1P39880 AC006600.2-201ENST00000624834 2506 ntBASIC9.03□□□□□ -0.96
CUX1P39880 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
CUX1P39880 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC9.03□□□□□ -0.96
CUX1P39880 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC9.03□□□□□ -0.96
CUX1P39880 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC9.03□□□□□ -0.96
CUX1P39880 RN7SL423P-201ENST00000486202 304 ntBASIC9.03□□□□□ -0.96
CUX1P39880 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC9.03□□□□□ -0.96
CUX1P39880 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
CUX1P39880 AC109464.1-201ENST00000511091 819 ntBASIC9.03□□□□□ -0.96
CUX1P39880 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC9.03□□□□□ -0.96
CUX1P39880 OR7H2P-201ENST00000513483 306 ntBASIC9.03□□□□□ -0.96
CUX1P39880 AC021006.3-201ENST00000530771 192 ntBASIC9.03□□□□□ -0.96
CUX1P39880 AC005084.1-201ENST00000605160 304 ntBASIC9.03□□□□□ -0.96
CUX1P39880 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
CUX1P39880 MIR7641-1-201ENST00000627518 61 ntBASIC9.03□□□□□ -0.96
CUX1P39880 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC9.03□□□□□ -0.96
CUX1P39880 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC9.03□□□□□ -0.96
CUX1P39880 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC9.02□□□□□ -0.96
CUX1P39880 AC007114.2-201ENST00000576014 4281 ntBASIC9.02□□□□□ -0.96
CUX1P39880 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.96
CUX1P39880 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
CUX1P39880 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
CUX1P39880 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC9.02□□□□□ -0.97
CUX1P39880 RNGTTP1-201ENST00000420965 728 ntBASIC9.02□□□□□ -0.97
CUX1P39880 AC008072.1-201ENST00000434254 824 ntBASIC9.02□□□□□ -0.97
CUX1P39880 AP000797.2-201ENST00000475768 606 ntBASIC9.02□□□□□ -0.97
CUX1P39880 RPL17P2-201ENST00000491913 451 ntBASIC9.02□□□□□ -0.97
CUX1P39880 AC005000.1-201ENST00000536192 288 ntBASIC9.02□□□□□ -0.97
CUX1P39880 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
CUX1P39880 AL450226.2-201ENST00000622913 439 ntBASIC9.02□□□□□ -0.97
CUX1P39880 OR9K1P-202ENST00000641111 3217 ntBASIC9.02□□□□□ -0.97
CUX1P39880 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC9.02□□□□□ -0.97
CUX1P39880 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
CUX1P39880 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC9.02□□□□□ -0.97
CUX1P39880 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC9.02□□□□□ -0.97
CUX1P39880 AC022164.1-201ENST00000568767 2673 ntBASIC9.02□□□□□ -0.97
CUX1P39880 IRF5P1-201ENST00000504852 2164 ntBASIC9.02□□□□□ -0.97
CUX1P39880 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
CUX1P39880 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
CUX1P39880 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
CUX1P39880 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
CUX1P39880 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC9.02□□□□□ -0.97
CUX1P39880 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC9.01□□□□□ -0.97
CUX1P39880 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC9.01□□□□□ -0.97
CUX1P39880 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
CUX1P39880 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
CUX1P39880 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
CUX1P39880 RNA5SP505-201ENST00000364748 108 ntBASIC9.01□□□□□ -0.97
CUX1P39880 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
CUX1P39880 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
CUX1P39880 OR2AM1P-201ENST00000422137 422 ntBASIC9.01□□□□□ -0.97
CUX1P39880 RPL12P17-201ENST00000432393 498 ntBASIC9.01□□□□□ -0.97
CUX1P39880 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC9.01□□□□□ -0.97
CUX1P39880 AL138878.2-201ENST00000440581 1241 ntBASIC9.01□□□□□ -0.97
CUX1P39880 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC9.01□□□□□ -0.97
CUX1P39880 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC9.01□□□□□ -0.97
CUX1P39880 GTF2F2P1-201ENST00000511083 675 ntBASIC9.01□□□□□ -0.97
CUX1P39880 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC9.01□□□□□ -0.97
CUX1P39880 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC9.01□□□□□ -0.97
CUX1P39880 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC9.01□□□□□ -0.97
CUX1P39880 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC9.01□□□□□ -0.97
CUX1P39880 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC9.01□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms