Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PGAM1P13-201ENST00000507497 754 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 AC091912.1-201ENST00000511351 248 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 RNA5SP34-201ENST00000516887 130 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
COL3A1P02461 AC018558.5-201ENST00000565840 952 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC7.29□□□□□ -1.24
COL3A1P02461 AP005403.1-201ENST00000579720 229 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 AC013244.1-201ENST00000604279 193 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
COL3A1P02461 ATP5A1P1-201ENST00000454088 1321 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL3A1P02461 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
COL3A1P02461 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL3A1P02461 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL3A1P02461 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
COL3A1P02461 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL3A1P02461 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC7.28□□□□□ -1.24
COL3A1P02461 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL3A1P02461 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL3A1P02461 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC7.28□□□□□ -1.24
COL3A1P02461 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL3A1P02461 AP003175.1-201ENST00000641383 6658 ntBASIC7.28□□□□□ -1.24
COL3A1P02461 AP000568.1-201ENST00000282964 442 ntBASIC7.28□□□□□ -1.24
COL3A1P02461 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL3A1P02461 AC009804.1-201ENST00000400949 179 ntBASIC7.28□□□□□ -1.24
COL3A1P02461 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC7.28□□□□□ -1.24
COL3A1P02461 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC7.28□□□□□ -1.24
COL3A1P02461 OR52B5P-201ENST00000435337 951 ntBASIC7.28□□□□□ -1.24
COL3A1P02461 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC7.28□□□□□ -1.24
COL3A1P02461 RPS4XP1-201ENST00000482189 787 ntBASIC7.28□□□□□ -1.24
COL3A1P02461 MTND6P2-201ENST00000512226 524 ntBASIC7.28□□□□□ -1.24
COL3A1P02461 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC7.28□□□□□ -1.24
COL3A1P02461 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC7.28□□□□□ -1.24
COL3A1P02461 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC7.28□□□□□ -1.24
COL3A1P02461 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC7.28□□□□□ -1.24
COL3A1P02461 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL3A1P02461 OR52B5P-202ENST00000641118 1110 ntBASIC7.28□□□□□ -1.24
COL3A1P02461 AC109780.1-201ENST00000451768 1344 ntBASIC7.28□□□□□ -1.24
COL3A1P02461 AC123912.3-201ENST00000600907 1367 ntBASIC7.28□□□□□ -1.24
COL3A1P02461 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC7.28□□□□□ -1.24
COL3A1P02461 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL3A1P02461 AL359715.3-201ENST00000569267 2123 ntBASIC7.28□□□□□ -1.24
COL3A1P02461 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC7.28□□□□□ -1.24
COL3A1P02461 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL3A1P02461 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL3A1P02461 SELE-205ENST00000367777 3576 ntTSL 5 BASIC7.27□□□□□ -1.25
COL3A1P02461 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC7.27□□□□□ -1.25
COL3A1P02461 AC138907.8-201ENST00000623981 2256 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL3A1P02461 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC7.27□□□□□ -1.25
COL3A1P02461 SNORA58B-201ENST00000364259 136 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 RN7SKP6-201ENST00000364795 319 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 AL133388.1-201ENST00000404509 287 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 RN7SKP273-201ENST00000411392 314 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC7.27□□□□□ -1.25
COL3A1P02461 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC7.27□□□□□ -1.25
COL3A1P02461 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC7.27□□□□□ -1.25
COL3A1P02461 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC7.27□□□□□ -1.25
COL3A1P02461 FAR2P1-206ENST00000449736 709 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 RN7SL515P-201ENST00000463999 297 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC7.27□□□□□ -1.25
COL3A1P02461 AC008410.1-201ENST00000483777 339 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 AC015864.1-201ENST00000496512 544 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 HMGB1P44-201ENST00000508597 572 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 BX510359.5-201ENST00000515651 304 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC7.27□□□□□ -1.25
COL3A1P02461 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC7.27□□□□□ -1.25
COL3A1P02461 OR4A43P-201ENST00000532938 908 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 MTATP6P25-201ENST00000574491 261 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC7.27□□□□□ -1.25
COL3A1P02461 AL356094.1-201ENST00000624663 1212 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC7.27□□□□□ -1.25
COL3A1P02461 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL3A1P02461 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC7.27□□□□□ -1.25
COL3A1P02461 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC7.27□□□□□ -1.25
COL3A1P02461 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL3A1P02461 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC7.27□□□□□ -1.25
COL3A1P02461 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC7.27□□□□□ -1.25
COL3A1P02461 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC7.27□□□□□ -1.25
COL3A1P02461 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL3A1P02461 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL3A1P02461 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC7.27□□□□□ -1.25
COL3A1P02461 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC7.27□□□□□ -1.25
COL3A1P02461 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC7.27□□□□□ -1.25
COL3A1P02461 ABCA11P-202ENST00000504019 2110 ntBASIC7.27□□□□□ -1.25
COL3A1P02461 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL3A1P02461 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
COL3A1P02461 AL592429.1-201ENST00000403909 1473 ntBASIC7.26□□□□□ -1.25
COL3A1P02461 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL3A1P02461 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
COL3A1P02461 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL3A1P02461 RN7SKP185-201ENST00000362813 326 ntBASIC7.26□□□□□ -1.25
COL3A1P02461 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC7.26□□□□□ -1.25
COL3A1P02461 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
COL3A1P02461 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC7.26□□□□□ -1.25
COL3A1P02461 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC7.26□□□□□ -1.25
COL3A1P02461 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC7.26□□□□□ -1.25
COL3A1P02461 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC7.26□□□□□ -1.25
COL3A1P02461 AC099670.2-201ENST00000435130 321 ntBASIC7.26□□□□□ -1.25
COL3A1P02461 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms