Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim54Q9ERP3 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim54Q9ERP3 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC18.27■□□□□ 0.52
Trim54Q9ERP3 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim54Q9ERP3 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC18.27■□□□□ 0.52
Trim54Q9ERP3 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim54Q9ERP3 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Trim54Q9ERP3 Olfr129-201ENSMUST00000122318 993 ntBASIC18.27■□□□□ 0.52
Trim54Q9ERP3 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.51
Trim54Q9ERP3 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim54Q9ERP3 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim54Q9ERP3 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim54Q9ERP3 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Gm27357-201ENSMUST00000183754 135 ntBASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim54Q9ERP3 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Gm11336-201ENSMUST00000118168 334 ntBASIC18.25■□□□□ 0.51
Trim54Q9ERP3 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Trim54Q9ERP3 Gm44832-201ENSMUST00000208849 2303 ntBASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Gm7461-201ENSMUST00000058918 827 ntBASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim54Q9ERP3 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim54Q9ERP3 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 59.4 ms