Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 AC107711.5-202ENSMUST00000226429 702 ntBASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Gm8839-201ENSMUST00000121279 1645 ntBASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim11Q99PQ2 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 AC120002.2-201ENSMUST00000220205 773 ntBASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Gm43548-201ENSMUST00000197139 2353 ntBASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Trim11Q99PQ2 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 AL590614.2-201ENSMUST00000225374 1937 ntBASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 AC156016.1-201ENSMUST00000227190 1035 ntBASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim11Q99PQ2 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim11Q99PQ2 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim11Q99PQ2 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim11Q99PQ2 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim11Q99PQ2 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim11Q99PQ2 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim11Q99PQ2 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC19.22■□□□□ 0.67
Trim11Q99PQ2 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Gm715-201ENSMUST00000117865 831 ntBASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Gm27000-201ENSMUST00000182943 842 ntBASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Odf3b-204ENSMUST00000227834 930 ntBASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim11Q99PQ2 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.66
Trim11Q99PQ2 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim11Q99PQ2 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms