Protein–RNA interactions for Protein: Q91V10

Vsx1, Visual system homeobox 1, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vsx1Q91V10 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC16.69■□□□□ 0.26
Vsx1Q91V10 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
Vsx1Q91V10 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vsx1Q91V10 Gm8969-201ENSMUST00000199694 526 ntBASIC16.69■□□□□ 0.26
Vsx1Q91V10 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC16.69■□□□□ 0.26
Vsx1Q91V10 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Vsx1Q91V10 AC153889.1-201ENSMUST00000219257 330 ntBASIC16.69■□□□□ 0.26
Vsx1Q91V10 AC122351.1-201ENSMUST00000220467 126 ntBASIC16.69■□□□□ 0.26
Vsx1Q91V10 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vsx1Q91V10 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC16.69■□□□□ 0.26
Vsx1Q91V10 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Vsx1Q91V10 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Vsx1Q91V10 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vsx1Q91V10 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vsx1Q91V10 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vsx1Q91V10 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vsx1Q91V10 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC16.68■□□□□ 0.26
Vsx1Q91V10 Fst-202ENSMUST00000223640 2612 ntBASIC16.67■□□□□ 0.26
Vsx1Q91V10 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC16.67■□□□□ 0.26
Vsx1Q91V10 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC16.67■□□□□ 0.26
Vsx1Q91V10 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC16.67■□□□□ 0.26
Vsx1Q91V10 Zcchc6-207ENSMUST00000225576 2499 ntBASIC16.67■□□□□ 0.26
Vsx1Q91V10 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Gm6598-201ENSMUST00000202719 2615 ntBASIC16.66■□□□□ 0.26
Vsx1Q91V10 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC16.66■□□□□ 0.26
Vsx1Q91V10 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Gm2651-201ENSMUST00000203560 838 ntBASIC16.66■□□□□ 0.26
Vsx1Q91V10 Gm9449-201ENSMUST00000207265 1011 ntBASIC16.66■□□□□ 0.26
Vsx1Q91V10 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC16.66■□□□□ 0.26
Vsx1Q91V10 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vsx1Q91V10 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms