Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ccdc28aQ8CEI3 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ccdc28aQ8CEI3 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ccdc28aQ8CEI3 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ccdc28aQ8CEI3 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC17.87■□□□□ 0.45
Ccdc28aQ8CEI3 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ccdc28aQ8CEI3 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ccdc28aQ8CEI3 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ccdc28aQ8CEI3 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ccdc28aQ8CEI3 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Ccdc28aQ8CEI3 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ccdc28aQ8CEI3 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Gm8495-201ENSMUST00000188740 694 ntBASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28aQ8CEI3 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28aQ8CEI3 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Gm4974-201ENSMUST00000209974 875 ntBASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28aQ8CEI3 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc28aQ8CEI3 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc28aQ8CEI3 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc28aQ8CEI3 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc28aQ8CEI3 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc28aQ8CEI3 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Gm11249-201ENSMUST00000117071 859 ntBASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Gm12896-201ENSMUST00000118430 226 ntBASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28aQ8CEI3 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28aQ8CEI3 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28aQ8CEI3 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms