Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ubfd1Q78JW9 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ubfd1Q78JW9 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Gm11336-201ENSMUST00000118168 334 ntBASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Gm18115-201ENSMUST00000221209 621 ntBASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 AC130713.1-201ENSMUST00000228853 1096 ntBASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Gm6190-201ENSMUST00000220683 1374 ntBASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Fcho2-208ENSMUST00000224992 2964 ntBASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ubfd1Q78JW9 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Gm45328-201ENSMUST00000210942 917 ntBASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ubfd1Q78JW9 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ubfd1Q78JW9 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ubfd1Q78JW9 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ubfd1Q78JW9 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Tfap2a-209ENSMUST00000225180 1828 ntBASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Ank2-226ENSMUST00000189368 339 ntBASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
Ubfd1Q78JW9 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Zcchc6-207ENSMUST00000225576 2499 ntBASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ubfd1Q78JW9 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Phf7-203ENSMUST00000226565 1971 ntBASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Ubfd1Q78JW9 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms