Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 AL590614.2-201ENSMUST00000225374 1937 ntBASIC20.92■□□□□ 0.94
Ddx58Q6Q899 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Rarb-207ENSMUST00000225921 2756 ntBASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx58Q6Q899 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Mir3081-201ENSMUST00000175305 84 ntBASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Gm28033-201ENSMUST00000184224 96 ntBASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Gm29707-201ENSMUST00000196325 491 ntBASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx58Q6Q899 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ddx58Q6Q899 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Ddx58Q6Q899 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ddx58Q6Q899 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx58Q6Q899 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.89■□□□□ 0.93
Ddx58Q6Q899 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx58Q6Q899 Gm15794-201ENSMUST00000120182 631 ntBASIC20.89■□□□□ 0.93
Ddx58Q6Q899 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx58Q6Q899 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx58Q6Q899 Gm18421-201ENSMUST00000204122 625 ntBASIC20.89■□□□□ 0.93
Ddx58Q6Q899 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx58Q6Q899 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx58Q6Q899 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx58Q6Q899 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx58Q6Q899 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Olfr129-201ENSMUST00000122318 993 ntBASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Zkscan4-202ENSMUST00000225845 1506 ntBASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx58Q6Q899 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Ddx58Q6Q899 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx58Q6Q899 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC20.85■□□□□ 0.93
Ddx58Q6Q899 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx58Q6Q899 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Ddx58Q6Q899 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx58Q6Q899 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 68.7 ms