Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb4Q6P8W9 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
Hmgb4Q6P8W9 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Hmgb4Q6P8W9 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb4Q6P8W9 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb4Q6P8W9 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb4Q6P8W9 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Hmgb4Q6P8W9 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb4Q6P8W9 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb4Q6P8W9 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Hmgb4Q6P8W9 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Gm9103-201ENSMUST00000119371 405 ntBASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Gm17661-201ENSMUST00000170317 270 ntBASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Il3ra-202ENSMUST00000223589 738 ntBASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb4Q6P8W9 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Mir1668-201ENSMUST00000184114 107 ntBASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Gm27741-201ENSMUST00000185060 237 ntBASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 AC154471.1-201ENSMUST00000224418 436 ntBASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb4Q6P8W9 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb4Q6P8W9 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Gm5587-201ENSMUST00000206270 674 ntBASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Idnk-204ENSMUST00000226010 1898 ntBASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Hmgb4Q6P8W9 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 Gm8969-201ENSMUST00000199694 526 ntBASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms