Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf1Q69ZI1 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Gm11643-201ENSMUST00000119578 864 ntBASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Gm10138-203ENSMUST00000206952 366 ntBASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Gm29791-202ENSMUST00000207888 369 ntBASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf1Q69ZI1 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf1Q69ZI1 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Gm42545-201ENSMUST00000202755 922 ntBASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf1Q69ZI1 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Gm45560-201ENSMUST00000211492 1472 ntBASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Gm15375-201ENSMUST00000119510 849 ntBASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Gm43799-201ENSMUST00000201845 579 ntBASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Gm18025-201ENSMUST00000221733 862 ntBASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf1Q69ZI1 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3rf1Q69ZI1 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms