Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 AA414768-201ENSMUST00000121924 1257 ntBASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Gm11620-201ENSMUST00000118770 1845 ntBASIC20.3■□□□□ 0.84
Vps54Q5SPW0 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Gm42900-201ENSMUST00000197184 2167 ntBASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Vps54Q5SPW0 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Gm6345-202ENSMUST00000180900 204 ntBASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC20.28■□□□□ 0.84
Vps54Q5SPW0 Gm8258-201ENSMUST00000055593 1449 ntBASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Gm45203-201ENSMUST00000206384 1831 ntBASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Gm15635-204ENSMUST00000208024 2539 ntBASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps54Q5SPW0 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Vps54Q5SPW0 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Gm37722-201ENSMUST00000193757 208 ntBASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps54Q5SPW0 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Vps54Q5SPW0 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Vps54Q5SPW0 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC20.25■□□□□ 0.83
Vps54Q5SPW0 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Vps54Q5SPW0 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Vps54Q5SPW0 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC20.25■□□□□ 0.83
Vps54Q5SPW0 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Vps54Q5SPW0 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Vps54Q5SPW0 Gm11355-201ENSMUST00000121120 306 ntBASIC20.25■□□□□ 0.83
Vps54Q5SPW0 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms