Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC19.4■□□□□ 0.7
Ccdc88aQ5SNZ0 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC19.4■□□□□ 0.7
Ccdc88aQ5SNZ0 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc88aQ5SNZ0 Gm18421-201ENSMUST00000204122 625 ntBASIC19.4■□□□□ 0.7
Ccdc88aQ5SNZ0 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC19.4■□□□□ 0.7
Ccdc88aQ5SNZ0 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc88aQ5SNZ0 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc88aQ5SNZ0 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
Ccdc88aQ5SNZ0 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc88aQ5SNZ0 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc88aQ5SNZ0 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc88aQ5SNZ0 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Ccdc88aQ5SNZ0 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Ccdc88aQ5SNZ0 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Ccdc88aQ5SNZ0 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Ccdc88aQ5SNZ0 Gm26039-201ENSMUST00000158152 144 ntBASIC19.39■□□□□ 0.7
Ccdc88aQ5SNZ0 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC19.39■□□□□ 0.7
Ccdc88aQ5SNZ0 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.7
Ccdc88aQ5SNZ0 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC19.39■□□□□ 0.7
Ccdc88aQ5SNZ0 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Ccdc88aQ5SNZ0 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Ccdc88aQ5SNZ0 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Ccdc88aQ5SNZ0 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Mir5126-201ENSMUST00000175513 77 ntBASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Vti1a-206ENSMUST00000225529 1244 ntBASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC19.39■□□□□ 0.69
Ccdc88aQ5SNZ0 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 AC138767.1-201ENSMUST00000222661 415 ntBASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm11620-201ENSMUST00000118770 1845 ntBASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 AC124392.1-201ENSMUST00000225172 5324 ntBASIC19.38■□□□□ 0.69
Ccdc88aQ5SNZ0 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc88aQ5SNZ0 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm42900-201ENSMUST00000197184 2167 ntBASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm6190-201ENSMUST00000220683 1374 ntBASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc88aQ5SNZ0 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc88aQ5SNZ0 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms