Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Gm15500-202ENSMUST00000071641 1019 ntBASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Col27a1Q5QNQ9 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Gm7222-201ENSMUST00000117512 906 ntBASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Gm7229-201ENSMUST00000214719 1007 ntBASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Gm35558-201ENSMUST00000222675 2219 ntBASIC16.31■□□□□ 0.2
Col27a1Q5QNQ9 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Gm15442-201ENSMUST00000117905 1527 ntBASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Gm5682-201ENSMUST00000173402 505 ntBASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Col27a1Q5QNQ9 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Gm44945-201ENSMUST00000206764 1187 ntBASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 AC174742.1-201ENSMUST00000218272 304 ntBASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Gfra2-202ENSMUST00000227633 1480 ntBASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Gm44872-201ENSMUST00000207864 420 ntBASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col27a1Q5QNQ9 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col27a1Q5QNQ9 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col27a1Q5QNQ9 Gm5837-201ENSMUST00000191844 1369 ntBASIC16.27■□□□□ 0.2
Col27a1Q5QNQ9 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Col27a1Q5QNQ9 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col27a1Q5QNQ9 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Col27a1Q5QNQ9 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col27a1Q5QNQ9 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC16.27■□□□□ 0.2
Col27a1Q5QNQ9 Gm11764-201ENSMUST00000120221 623 ntBASIC16.27■□□□□ 0.2
Col27a1Q5QNQ9 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col27a1Q5QNQ9 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms